Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZY47_RS08145 Genome accession   NZ_CP113915
Coordinates   2138433..2140268 (-) Length   611 a.a.
NCBI ID   WP_277177871.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0790     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2133433..2145268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZY47_RS08135 (OZY47_08135) - 2134165..2135283 (-) 1119 WP_277177869.1 class C sortase -
  OZY47_RS08140 (OZY47_08140) - 2135666..2137606 (-) 1941 WP_277177870.1 isopeptide-forming domain-containing fimbrial protein -
  OZY47_RS08145 (OZY47_08145) rcrQ 2138433..2140268 (-) 1836 WP_277177871.1 ABC transporter ATP-binding protein Regulator
  OZY47_RS08150 (OZY47_08150) rcrP 2140389..2142248 (-) 1860 WP_277177872.1 ABC transporter ATP-binding protein Regulator
  OZY47_RS08155 (OZY47_08155) - 2142774..2143256 (-) 483 Protein_1578 MarR family winged helix-turn-helix transcriptional regulator -
  OZY47_RS08160 (OZY47_08160) - 2143602..2143808 (-) 207 WP_277177873.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67199.89 Da        Isoelectric Point: 7.2755

>NTDB_id=763499 OZY47_RS08145 WP_277177871.1 2138433..2140268(-) (rcrQ) [Bifidobacterium sp. ESL0790]
MPRMRGPAEKPADFGGVMLKLVRYCKKYLPVIVIALILGAAGTICQIIGPDQLKNMTNAIAKGMPALVHGKPVMGAVDMG
EVTRIAWLLVGLYAGYAILGYAQHWMMATVTQRIAQSLRKSISDKINKLPLKYFDHTSYGDVLSRITNDVDAIGQTLGQS
LGMLITSVTLFVGSLVMMFYNNVIMTVCAIVVSLLGVVIMMVIMKYSQKYFARQQLALGDVNGHVEEMYSGHIVVKAYNG
EADSVRRFKKYNNDLYDSAWKSQFLSGLMNPLMNLVGNLGFVTVCIVGGALAINGQIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESKKPTLLGRDPKTGEPTRVRGDVEFKHVSFGYEPGKPIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGSMSIDGIDTSTVPRSNVHDQFSMVLQDTWVFNGTVKENIAYSKQGVTDEQIEDA
CKAVGLDHYIRSLPQGYDTVLDDKSSLSQGQRQLMTIARAMVQDAPILILDEATSSVDTRTEELIQKSMDQLTVGRTSFV
IAHRLSTIRNADMILVMNHGDIIERGTHDELLARGGFYADLYNSQFSTLVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763499 OZY47_RS08145 WP_277177871.1 2138433..2140268(-) (rcrQ) [Bifidobacterium sp. ESL0790]
ATGCCAAGAATGAGGGGGCCGGCCGAGAAGCCGGCTGATTTCGGCGGGGTGATGCTCAAACTCGTCAGGTATTGCAAGAA
ATACCTGCCCGTCATCGTCATCGCGCTGATTCTGGGGGCCGCCGGCACCATCTGCCAGATCATCGGCCCGGACCAGTTGA
AGAACATGACCAACGCCATCGCCAAGGGCATGCCCGCCCTGGTGCACGGCAAGCCCGTGATGGGCGCGGTCGACATGGGC
GAGGTCACGCGCATCGCGTGGCTGCTGGTCGGCCTCTACGCCGGCTACGCCATCCTCGGCTACGCGCAACACTGGATGAT
GGCCACCGTCACCCAGCGCATCGCCCAGAGCCTGCGCAAGTCGATCTCCGACAAGATCAACAAGCTGCCGCTCAAGTACT
TCGACCACACCAGCTATGGCGACGTGCTTTCGCGCATCACCAACGACGTTGACGCCATCGGCCAGACCCTGGGCCAGTCG
CTGGGCATGCTCATCACCTCGGTCACGCTGTTCGTCGGCTCGCTGGTGATGATGTTCTATAACAACGTCATCATGACGGT
GTGCGCCATCGTGGTCTCGCTTTTGGGCGTGGTCATCATGATGGTGATCATGAAGTACTCGCAGAAGTACTTCGCCCGCC
AGCAGCTCGCGCTCGGCGACGTCAACGGCCACGTCGAGGAGATGTATTCCGGCCACATCGTCGTCAAGGCCTACAACGGC
GAGGCGGATTCGGTGCGCCGTTTCAAGAAGTACAACAACGACCTCTATGATTCGGCGTGGAAGAGCCAGTTCCTCTCGGG
CCTGATGAATCCGCTGATGAACCTTGTGGGCAACCTCGGCTTCGTGACCGTCTGCATCGTCGGCGGCGCGCTCGCCATCA
ACGGGCAGATCGAGTTCGGCGTCATCGTGGCGTTCATGATGTACGTCCGCCTCTTCACCCAGCCGCTTTCGCAGTTCGCG
CAGGCCTTCCAGAACCTGCAGCGTTGCGCCGCCGCCTCCGAGCGCGTCTTCGGCTTCCTCGAGGAGCCTGAGATGAGCGA
CGAGAGCAAGAAGCCCACGTTGCTTGGCCGCGACCCGAAGACCGGCGAGCCCACCCGCGTGCGTGGCGACGTCGAGTTCA
AGCACGTCAGCTTCGGCTACGAGCCCGGCAAGCCGATCATCCATGACTTCTCCGCGTCCGTGAAGGCGGGCCAGAAGGTC
GCTATCGTCGGTCCCACCGGCGCCGGCAAGTCCACGATGGTCAACCTGTTGATGCGCTTCTACGACATCGACGGCGGCTC
CATGTCCATCGACGGCATCGACACCTCCACCGTGCCGCGTTCGAACGTGCACGACCAGTTCTCGATGGTGCTGCAGGACA
CGTGGGTCTTCAACGGCACCGTCAAGGAGAACATCGCCTACTCGAAGCAGGGCGTCACCGACGAGCAGATCGAGGACGCG
TGCAAGGCCGTGGGGCTCGACCACTACATCCGCTCGTTGCCGCAGGGTTACGACACCGTGCTCGACGACAAGTCCTCGCT
TTCGCAGGGGCAGCGCCAGCTGATGACGATCGCCCGCGCGATGGTACAGGACGCGCCGATCCTGATCCTGGACGAGGCGA
CCTCGTCGGTCGACACCCGCACCGAGGAGCTCATCCAGAAGTCGATGGACCAGCTGACCGTGGGGCGCACGAGCTTCGTG
ATCGCGCACCGCCTCTCGACCATCCGCAACGCCGACATGATCCTGGTGATGAACCACGGCGACATCATCGAGCGCGGCAC
CCACGACGAGCTGCTGGCCAGGGGCGGCTTCTATGCCGACCTCTACAACAGCCAGTTCTCCACGCTGGTGGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-535)

ABC transporter transmembrane region (ABC_membrane)

(33-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.716

96.89

0.52