Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX74_RS08675 Genome accession   NZ_CP113914
Coordinates   2124397..2126232 (-) Length   611 a.a.
NCBI ID   WP_277156510.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0798     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2119397..2131232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX74_RS08665 (OZX74_08670) - 2119952..2122411 (-) 2460 WP_277156508.1 hypothetical protein -
  OZX74_RS08670 (OZX74_08675) - 2122494..2122988 (-) 495 WP_277156509.1 hypothetical protein -
  OZX74_RS08675 (OZX74_08680) rcrQ 2124397..2126232 (-) 1836 WP_277156510.1 ABC transporter ATP-binding protein Regulator
  OZX74_RS08680 (OZX74_08685) rcrP 2126376..2128235 (-) 1860 WP_277156511.1 ABC transporter ATP-binding protein Regulator
  OZX74_RS08685 (OZX74_08690) - 2128558..2129088 (-) 531 WP_277156512.1 MarR family winged helix-turn-helix transcriptional regulator -
  OZX74_RS08690 (OZX74_08695) - 2129414..2129617 (-) 204 WP_277146035.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 66798.39 Da        Isoelectric Point: 6.5053

>NTDB_id=763494 OZX74_RS08675 WP_277156510.1 2124397..2126232(-) (rcrQ) [Bifidobacterium sp. ESL0798]
MPRMRGPVEKPADFGGVMAKLVRYCKKYVPAIVVALVLGAAGTICQIIGPDQLKNMTNAIAKGLPAMVHGKPVMGAVDMG
EVTRIAWLLVGLYAGYAVLGYVQQWMMATVTQRVGQSLRRSISDKINKLPLKYFDKTSYGDVLSRITNDVDAIGQTLGQS
LGMLITSVTLFVGSLAMMFYNNVIMTVCAIVVSILGIVVMMLIMKYSQKYFAQQQLALGEVNGHVEEMYAGHTVVKAYNG
EADSIRRFEKYNNDLYDSAWKSQFLSGLMGPMMNMIGNLSFVAVCIVGGALAIDGKIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESKKPALLGRDPKTGKPARVRGDVEFKDVNFGYEPGKTIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGSMTIDGIDTSTVPRANVHEQFSMVLQDTWVFHGTVRENVAYAKKGVTDEQIEQA
CKAVGLDHYVRSLPQGYDTVLDDNTSLSAGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQQAMDALTVGRTSFV
IAHRLSTIKDADMILVMNHGDIVERGTHGELLAAGGFYADLYNSQFSELVE

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763494 OZX74_RS08675 WP_277156510.1 2124397..2126232(-) (rcrQ) [Bifidobacterium sp. ESL0798]
ATGCCAAGAATGAGGGGACCGGTCGAGAAGCCGGCCGATTTCGGCGGAGTGATGGCCAAGCTGGTGCGGTACTGCAAGAA
GTACGTGCCCGCTATCGTCGTCGCGCTTGTGCTGGGCGCCGCCGGCACTATCTGCCAGATCATCGGGCCTGACCAGCTGA
AGAACATGACCAACGCCATCGCCAAGGGGCTGCCCGCCATGGTGCACGGCAAGCCGGTGATGGGCGCGGTCGACATGGGC
GAGGTCACGCGCATCGCGTGGCTGCTGGTCGGTCTGTACGCGGGGTACGCGGTGCTGGGCTACGTCCAGCAGTGGATGAT
GGCCACGGTCACCCAGCGCGTCGGCCAGAGCCTGCGCCGCTCGATTAGTGACAAGATCAACAAGCTGCCGCTCAAGTATT
TCGACAAGACCAGCTATGGCGACGTGCTCTCGCGCATCACCAACGACGTCGACGCCATCGGCCAGACCCTGGGCCAGTCG
CTGGGCATGCTGATCACCTCGGTCACGCTTTTCGTCGGCTCGCTGGCGATGATGTTCTACAACAACGTCATCATGACCGT
CTGCGCCATCGTGGTCTCGATTCTGGGCATCGTGGTGATGATGCTCATCATGAAATACTCGCAGAAGTACTTCGCCCAGC
AGCAACTCGCGCTCGGCGAGGTTAACGGCCATGTCGAGGAGATGTACGCCGGCCACACCGTCGTCAAGGCCTACAACGGT
GAGGCCGACTCCATCCGCCGCTTCGAGAAGTACAACAACGACCTCTACGATTCCGCGTGGAAGAGCCAGTTCCTCTCCGG
CCTGATGGGCCCGATGATGAACATGATCGGCAACCTGAGCTTCGTCGCGGTCTGCATTGTGGGCGGGGCGCTCGCCATCG
ACGGCAAGATCGAGTTCGGCGTCATCGTGGCCTTCATGATGTACGTCCGTCTCTTCACCCAGCCGCTTTCGCAGTTCGCA
CAGGCCTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAGCGCGTCTTCGGCTTCCTCGAGGAGCCCGAGATGAGCGA
CGAGAGCAAGAAGCCCGCGTTGCTCGGCCGCGACCCGAAGACCGGCAAGCCCGCGCGTGTGCGCGGCGACGTCGAATTCA
AGGATGTCAACTTCGGCTACGAGCCCGGCAAGACGATTATTCACGACTTCTCTGCGTCGGTGAAGGCGGGCCAGAAAGTC
GCCATCGTCGGCCCGACCGGGGCCGGCAAATCCACCATGGTCAATCTGCTGATGCGCTTCTACGACATCGACGGCGGCTC
CATGACCATCGACGGCATCGACACCTCCACCGTGCCGCGAGCCAACGTACACGAGCAGTTCTCGATGGTGTTGCAGGACA
CGTGGGTCTTCCATGGCACCGTGCGCGAAAATGTCGCCTACGCCAAGAAAGGCGTCACCGATGAGCAGATCGAGCAGGCG
TGCAAGGCCGTCGGGCTCGATCATTACGTGCGCTCGCTGCCGCAGGGCTACGACACCGTCCTCGACGACAACACCTCGCT
TTCGGCCGGCCAGCGCCAGTTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCAATCCTGATCTTGGACGAGGCCA
CCTCGTCGGTCGACACCCGCACCGAGGAGCTGATTCAGCAGGCGATGGACGCGCTGACGGTGGGCCGCACGAGCTTCGTG
ATTGCGCACCGCCTCTCGACCATCAAGGACGCGGACATGATCCTGGTGATGAACCACGGCGACATCGTCGAGCGCGGTAC
CCACGGCGAGTTGTTGGCTGCCGGCGGTTTCTACGCCGACCTCTACAACAGCCAGTTCTCCGAGTTGGTCGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-316)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.101

97.381

0.507