Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX75_RS07600 Genome accession   NZ_CP113913
Coordinates   2003855..2005690 (+) Length   611 a.a.
NCBI ID   WP_277146037.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0800     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1998855..2010690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX75_RS07585 (OZX75_07585) - 1999741..1999944 (+) 204 WP_277146035.1 hypothetical protein -
  OZX75_RS07590 (OZX75_07590) - 2000872..2001432 (+) 561 WP_277147511.1 MarR family transcriptional regulator -
  OZX75_RS07595 (OZX75_07595) rcrP 2001758..2003617 (+) 1860 WP_277146036.1 ABC transporter ATP-binding protein Regulator
  OZX75_RS07600 (OZX75_07600) rcrQ 2003855..2005690 (+) 1836 WP_277146037.1 ABC transporter ATP-binding protein Regulator
  OZX75_RS07605 (OZX75_07605) - 2006238..2007509 (-) 1272 WP_277146038.1 DUF4143 domain-containing protein -
  OZX75_RS07610 (OZX75_07610) - 2007808..2007936 (+) 129 WP_277146039.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67274.16 Da        Isoelectric Point: 7.4508

>NTDB_id=763490 OZX75_RS07600 WP_277146037.1 2003855..2005690(+) (rcrQ) [Bifidobacterium sp. ESL0800]
MPRMRGPVEKPADFGGVMLKLVRYCRKYLPAIVVALVLGAAGTICQIIGPDQLKNMTNAIAKGLPAMVHGKPVMGAVDMG
EVTRIAWLLVGLYVGYAVLNYIQHWMMATVTQRVGQSLRRSISDKINKLPLKYFDKTSYGDVLSRITNDVDAIGQTLGQS
LGMLITSITLFFGSLIMMFYNNVIMTLCAIVVSLLGIVVMMLIMKYSQKYFARQQIALGDVNGHVEEMYAGHTVVKAYNG
EADSIRKFEKYNNDLYDSAWKSQFLSGLMGPMMNMIGNLSFVAVCIVGGALAIDGKIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESKKPALLGRDPKTGKPTRVRGDVEFKDVNFGYEPGKTIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGKMTIDGIDTSTVPRSNVHEQFSMVLQDTWVFRGTVRENVAYAKKGVTDKQIEDA
CKAVGLDHYVRSLPQGYDTVLDDNSSLSAGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFV
IAHRLSTIKDADMILVMNHGDIVERGTHDELLAKGGFYADLYNSQFSELVD

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763490 OZX75_RS07600 WP_277146037.1 2003855..2005690(+) (rcrQ) [Bifidobacterium sp. ESL0800]
ATGCCAAGAATGAGGGGGCCGGTCGAGAAGCCGGCCGATTTCGGCGGAGTGATGCTCAAACTGGTGCGTTACTGCCGCAA
ATACCTGCCCGCCATCGTCGTCGCGCTCGTGTTGGGCGCGGCCGGCACCATCTGCCAGATCATCGGGCCGGACCAGCTGA
AGAACATGACCAACGCCATCGCCAAAGGCCTGCCCGCCATGGTGCACGGCAAGCCGGTGATGGGCGCGGTCGACATGGGC
GAGGTCACGCGCATCGCGTGGCTGCTCGTCGGCCTGTACGTCGGTTACGCGGTGCTGAACTATATCCAGCACTGGATGAT
GGCCACCGTCACCCAGCGCGTCGGCCAGAGCCTGCGCCGCTCGATTTCCGACAAAATCAACAAACTGCCGCTCAAGTATT
TCGACAAGACCAGCTACGGCGACGTGCTCTCTCGTATTACAAATGACGTCGACGCCATCGGCCAGACACTGGGCCAGTCG
CTGGGCATGCTGATCACCTCGATCACGCTGTTCTTCGGCTCGCTGATCATGATGTTCTACAACAACGTCATCATGACACT
CTGCGCCATCGTGGTCTCGCTGCTCGGCATCGTGGTGATGATGCTGATCATGAAGTATTCGCAGAAGTACTTCGCCCGCC
AGCAGATCGCGCTCGGCGACGTCAACGGCCACGTCGAGGAGATGTATGCCGGCCACACCGTCGTCAAGGCCTACAACGGC
GAGGCCGACTCCATCCGCAAGTTCGAGAAGTACAACAACGACCTCTACGATTCCGCGTGGAAGAGCCAGTTCCTCTCCGG
CCTGATGGGCCCGATGATGAACATGATCGGCAACCTGAGCTTCGTCGCCGTCTGCATCGTGGGCGGGGCGCTCGCCATCG
ACGGCAAGATCGAGTTCGGCGTCATCGTGGCGTTCATGATGTACGTGCGTCTCTTCACCCAGCCGCTTTCGCAGTTCGCG
CAGGCTTTCCAGAACCTGCAGCGCTGCGCCGCCGCCTCCGAGCGCGTCTTCGGCTTCCTCGAGGAGCCCGAGATGAGCGA
CGAGAGCAAGAAGCCGGCGCTGCTTGGCCGCGACCCGAAGACCGGCAAGCCCACCCGCGTGCGCGGCGACGTCGAGTTCA
AGGACGTCAACTTCGGCTACGAGCCCGGCAAGACGATCATCCACGACTTCTCTGCGTCCGTCAAGGCCGGGCAGAAGGTC
GCCATCGTCGGGCCGACCGGTGCCGGCAAGTCCACCATGGTCAACCTGCTGATGCGCTTCTACGACATCGACGGCGGCAA
GATGACCATCGATGGTATCGACACCTCGACCGTCCCGCGCTCCAACGTGCACGAGCAGTTCTCGATGGTGCTGCAGGACA
CGTGGGTCTTCCGCGGCACGGTACGCGAGAACGTCGCCTACGCCAAGAAGGGCGTCACCGATAAGCAGATCGAGGACGCG
TGCAAGGCCGTCGGGCTCGACCATTACGTGCGCTCGCTGCCGCAGGGTTACGACACCGTGCTCGACGACAATTCCTCGCT
TTCGGCCGGCCAGCGCCAGTTGCTGACGATCGCCCGCGCGATGGTGCAGGATGCGCCGATCCTGATCCTGGACGAGGCCA
CCTCGTCGGTCGACACCCGCACCGAGGAGCTGATCCAGAAGGCGATGGACGCGCTGACGGTGGGCCGCACGAGCTTCGTG
ATCGCGCATCGCCTCTCGACGATCAAGGACGCGGACATGATCCTGGTGATGAACCACGGCGACATCGTCGAGCGCGGCAC
CCACGACGAGCTGCTGGCCAAGGGCGGCTTCTACGCCGACCTCTACAACAGCCAGTTCTCCGAGCTGGTCGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-535)

ABC transporter transmembrane region (ABC_membrane)

(35-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.623

96.727

0.509