Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX75_RS07595 Genome accession   NZ_CP113913
Coordinates   2001758..2003617 (+) Length   619 a.a.
NCBI ID   WP_277146036.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0800     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1996758..2008617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX75_RS07575 (OZX75_07575) - 1997387..1997638 (-) 252 WP_277146034.1 hypothetical protein -
  OZX75_RS07580 (OZX75_07580) - 1997775..1999352 (+) 1578 WP_277147509.1 amino acid permease -
  OZX75_RS07585 (OZX75_07585) - 1999741..1999944 (+) 204 WP_277146035.1 hypothetical protein -
  OZX75_RS07590 (OZX75_07590) - 2000872..2001432 (+) 561 WP_277147511.1 MarR family transcriptional regulator -
  OZX75_RS07595 (OZX75_07595) rcrP 2001758..2003617 (+) 1860 WP_277146036.1 ABC transporter ATP-binding protein Regulator
  OZX75_RS07600 (OZX75_07600) rcrQ 2003855..2005690 (+) 1836 WP_277146037.1 ABC transporter ATP-binding protein Regulator
  OZX75_RS07605 (OZX75_07605) - 2006238..2007509 (-) 1272 WP_277146038.1 DUF4143 domain-containing protein -
  OZX75_RS07610 (OZX75_07610) - 2007808..2007936 (+) 129 WP_277146039.1 hypothetical protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 67797.06 Da        Isoelectric Point: 5.5021

>NTDB_id=763489 OZX75_RS07595 WP_277146036.1 2001758..2003617(+) (rcrP) [Bifidobacterium sp. ESL0800]
MLRISKYLSKTEIGQMLLSLAFIAGQVFFDLKLPDYMSKVTALVETPGSQMADIWKEGGKMLLVSLGSVVCAIAVGYFMA
RVGASFSQRLRSLEFRKVESFGPAEMNKFSTASLITRSTNDITQIQMFITMGVLLVFRAPIMAVWAIFKIAGKGFEWTVA
TAAATAIMLVFVIAIMTMVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQEAKFARVNDDLTDTQLFTTRTMAA
MNPVMSSVMNGLGLAIYWIGAYLIKDAALPADKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVMEVLDT
EPSVKSGTAREGKPGETGTVEFRNVGFAYPDTREEMLRGVSFTARRGQTIAFIGSTGSGKSTLVNLVPRFYDATEGEVLI
DGVNVRDYDIKALRDKIGYVPQQSVMFKGTVASNVSYGDRPGDAETVEVADTSTAKGRKRELALIEGESERDELSAEQKA
NVRAASEVAQASEFVDRMDGGYEAPIAQSGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKTHAA
DATKLIVAQRVGTIMDADQIVVLDDGKVVGKGTHKELLANCEVYKEIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763489 OZX75_RS07595 WP_277146036.1 2001758..2003617(+) (rcrP) [Bifidobacterium sp. ESL0800]
ATGCTTCGTATCAGCAAATACCTCTCCAAAACGGAGATCGGGCAGATGCTGCTGAGCCTGGCGTTCATCGCCGGACAGGT
CTTTTTCGACCTGAAGCTGCCGGACTATATGTCCAAGGTGACGGCGCTGGTCGAGACGCCGGGCAGCCAAATGGCCGATA
TCTGGAAAGAGGGCGGCAAGATGCTGCTCGTCTCGCTGGGCTCCGTGGTCTGCGCCATCGCCGTCGGCTACTTCATGGCC
CGCGTCGGCGCCTCGTTCAGCCAGCGTCTGCGCTCGCTCGAGTTCCGCAAGGTCGAATCCTTCGGGCCGGCCGAGATGAA
CAAGTTCTCCACGGCCTCGCTGATCACCCGCTCCACCAACGACATCACACAGATTCAGATGTTCATCACCATGGGCGTCC
TGCTGGTCTTCCGCGCGCCGATCATGGCCGTCTGGGCCATTTTCAAGATCGCGGGCAAAGGCTTTGAATGGACGGTGGCC
ACGGCCGCTGCCACAGCGATCATGCTGGTTTTCGTCATCGCCATCATGACTATGGTCATGCCGAAGTTCCGCTCGATGCA
GCGCCTGACCGATAATATCAACGCCGTCGCCCGCGAGAACCTGACCGGCCTGCGCGTCGTCCGCGCCTACAACGCCGAGG
ACTATCAGGAAGCCAAATTCGCGCGCGTCAACGACGACCTGACCGACACCCAACTCTTCACCACCCGCACGATGGCCGCG
ATGAACCCCGTCATGTCGAGCGTGATGAACGGCCTGGGCCTCGCCATCTACTGGATCGGCGCCTACCTCATCAAGGACGC
GGCGCTGCCGGCCGACAAACTCACCGACTTCTCGAATATGGTCGTCTTCTCCAGCTACGCGATGCAGGTCATCATGGCCT
TTCTGCTCCTGAGCATGGTCTTCGTGCTCTGGCCTCGTGCCGACGTCTCCGCACAGCGCGTCATGGAGGTGCTCGACACC
GAGCCGTCCGTCAAGTCCGGCACGGCTCGCGAGGGCAAGCCGGGAGAGACCGGCACCGTCGAGTTCCGCAACGTTGGTTT
CGCGTACCCCGACACCCGCGAGGAGATGCTGCGCGGCGTCAGCTTCACCGCCCGTCGCGGCCAGACCATCGCCTTCATCG
GCTCCACCGGTTCCGGCAAATCGACGCTGGTCAACCTCGTGCCGCGCTTCTACGACGCTACCGAGGGCGAGGTGCTGATT
GACGGCGTCAACGTTCGCGACTATGACATCAAGGCGCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGGTGATGTT
CAAGGGCACCGTGGCATCCAACGTCAGCTACGGCGACCGGCCCGGCGACGCCGAGACCGTCGAGGTGGCCGATACCTCCA
CCGCCAAGGGCCGTAAGCGCGAACTGGCGCTGATTGAGGGCGAAAGTGAGCGCGATGAGCTGAGCGCAGAACAGAAGGCG
AACGTTCGCGCCGCTAGCGAGGTGGCGCAGGCCAGCGAGTTCGTCGACCGTATGGACGGCGGCTACGAAGCGCCGATCGC
GCAGAGCGGATCCAACGTCTCCGGCGGCCAGAAGCAGCGGCTTTCCATCGCCCGCGCCGTCTACCGTCACCCGGAGATCA
TGGTCTTCGACGACTCGTTCAGTGCGCTCGACTTCAAGACGGACCGCGCGGTGCGCGACGCCTTGAAAACGCACGCCGCC
GACGCCACCAAGCTCATCGTCGCCCAGCGCGTCGGCACCATCATGGACGCCGACCAGATCGTCGTGCTCGACGACGGCAA
GGTGGTGGGCAAGGGCACGCACAAGGAGCTGCTCGCCAATTGCGAGGTCTACAAGGAGATCGCCGAATCGCAGCTGAGCC
CCGACGAGCTCGCCGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(61-294)

ABC transporter (ABC_tran)

(357-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.522

100

0.502