Detailed information NTG0763467

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMO63_RS07130
• Genome accession: NZ_CP125729
• Coordinates: 1534465..1535469 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SHPHC59
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1529465..1540469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMO63_RS07100 (QMO63_07080)	fghA	1529557..1530408 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
QMO63_RS07105 (QMO63_07085)	ispF	1530479..1530952 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMO63_RS07110 (QMO63_07090)	truD	1530949..1532016 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
QMO63_RS07115 (QMO63_07095)	surE	1532004..1532753 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QMO63_RS07120 (QMO63_07100)	-	1532786..1533421 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMO63_RS07125 (QMO63_07105)	-	1533467..1534360 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
QMO63_RS07130 (QMO63_07110)	rpoS	1534465..1535469 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QMO63_RS07135 (QMO63_07115)	fdxA	1535895..1536218 (-)	324	WP_003119354.1	ferredoxin FdxA	-
QMO63_RS07140 (QMO63_07120)	mutS	1536285..1538852 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QMO63_RS07145 (QMO63_07125)	-	1538978..1539985 (-)	1008	WP_003117491.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=763467 QMO63_RS07130 WP_003113871.1 1534465..1535469(+) (rpoS) [Pseudomonas aeruginosa strain SHPHC59]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=763467 QMO63_RS07130 WP_003113871.1 1534465..1535469(+) (rpoS) [Pseudomonas aeruginosa strain SHPHC59]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653