Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QMK16_RS03120 Genome accession   NZ_CP125396
Coordinates   597791..598174 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592791..603174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK16_RS03100 (QMK16_03100) - 592870..594804 (-) 1935 WP_283147455.1 ribonuclease R family protein -
  QMK16_RS03105 (QMK16_03105) ilvC 594923..595945 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  QMK16_RS03110 (QMK16_03110) - 595949..597031 (+) 1083 WP_002858589.1 divergent polysaccharide deacetylase family protein -
  QMK16_RS03115 (QMK16_03115) dprA 597021..597794 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  QMK16_RS03120 (QMK16_03120) dprB 597791..598174 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  QMK16_RS03125 (QMK16_03125) - 598203..599042 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMK16_RS03130 (QMK16_03130) msrA 599218..599715 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMK16_RS03135 (QMK16_03135) ppa 599756..600274 (-) 519 WP_002858521.1 inorganic diphosphatase -
  QMK16_RS03140 (QMK16_03140) adk 600284..600862 (-) 579 WP_002858481.1 adenylate kinase -
  QMK16_RS03145 (QMK16_03145) aspS 600859..602610 (-) 1752 WP_002858612.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=763255 QMK16_RS03120 WP_002858579.1 597791..598174(+) (dprB) [Campylobacter jejuni strain SKBC57]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=763255 QMK16_RS03120 WP_002858579.1 597791..598174(+) (dprB) [Campylobacter jejuni strain SKBC57]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449