Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OYT13_RS10050 Genome accession   NZ_CP113827
Coordinates   2201194..2202567 (+) Length   457 a.a.
NCBI ID   WP_017234104.1    Uniprot ID   A0A5E4VEA7
Organism   Pandoraea sp. XJJ-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2196194..2207567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT13_RS10030 (OYT13_10030) - 2196449..2197591 (+) 1143 WP_268567653.1 DUF1853 family protein -
  OYT13_RS10035 (OYT13_10035) thiD 2197644..2198468 (-) 825 WP_268567654.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OYT13_RS10040 (OYT13_10040) lplT 2198470..2199762 (-) 1293 WP_017234102.1 lysophospholipid transporter LplT -
  OYT13_RS10045 (OYT13_10045) alr 2200100..2201170 (+) 1071 WP_017234103.1 alanine racemase -
  OYT13_RS10050 (OYT13_10050) radA 2201194..2202567 (+) 1374 WP_017234104.1 DNA repair protein RadA Machinery gene
  OYT13_RS10055 (OYT13_10055) - 2202649..2204589 (-) 1941 WP_130025793.1 ATP-binding cassette domain-containing protein -
  OYT13_RS10060 (OYT13_10060) cls 2204762..2206189 (-) 1428 WP_017234106.1 cardiolipin synthase -
  OYT13_RS10065 (OYT13_10065) prmB 2206301..2207194 (-) 894 WP_017234107.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48134.32 Da        Isoelectric Point: 7.2690

>NTDB_id=763191 OYT13_RS10050 WP_017234104.1 2201194..2202567(+) (radA) [Pandoraea sp. XJJ-1]
MAKAKTVYICTECGGQTPKWAGQCPHCNGWNSLVESVAEAPTGHRYQSLAKSTPVRKLAQIEAADVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTVYSEALSSAPGSVAQVRECAAQLTRSAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKISEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEHAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=763191 OYT13_RS10050 WP_017234104.1 2201194..2202567(+) (radA) [Pandoraea sp. XJJ-1]
ATGGCCAAAGCCAAGACTGTCTATATTTGTACCGAATGCGGCGGGCAGACGCCCAAGTGGGCGGGGCAGTGTCCCCACTG
CAACGGCTGGAATTCGCTCGTCGAATCGGTGGCGGAAGCGCCGACAGGTCATCGATACCAATCGCTCGCCAAGAGTACGC
CTGTGCGCAAGCTCGCGCAGATCGAGGCGGCCGATGTGCCGCGCTTCTCCAGCGGCGTGAGCGAATTCGACCGCGTGCTG
GGCGGCGGTCTGGTTGCCGGCGGCGTGGTGCTCATCGGGGGAGATCCCGGGATCGGCAAGTCGACGCTGCTGCTTCAGTC
GCTTGCACATCTGGCGCGCGAACGGCGTGCGCTGTATGTGAGCGGCGAAGAATCGGGCGCGCAGATTGCCTTGCGTGCGC
AGCGCCTGGGCCTCGGCGCCGCGGGCGAGGGCGGCGGGGAATTGGATTTGCTGGCGGAAATCCAGCTCGAGAAGATTCTG
GGCGCCATCGAGTCGGAGAAGCCCGACGTGGTCGTGATCGACTCGATCCAGACGGTCTACTCAGAAGCGCTCAGTTCGGC
GCCGGGATCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAACTCACGCGCAGCGCCAAGCAGAGCGGCGTAACGGTGATCA
TGGTTGGCCACGTAACCAAGGAAGGCAGTCTCGCCGGGCCGCGCGTTCTCGAACACATCGTCGACACGGTGCTGTATTTC
GAGGGCGATACGCACTCGTCGTACCGGTTGGTGCGGGCGTTCAAAAATCGCTTCGGTGCCGTCAACGAGTTGGGCGTGTT
TGCGATGACGGAGAAAGGCCTGCGCGGCGTGGCGAATCCGTCGGCCTTGTTCCTCTCGCAACATGAGCAAAGCGTGCCGG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAGGTGCAGGCGCTGGTCGACACGGCGCAGGTG
CCCAATCCGCGGCGTTTGGCCGTGGGGCTGGAGCAGAACCGGCTGGCCATGTTGCTCGCCGTGATGCATCGTCATGCGGG
CATCGCCTGTTTCGATCAGGATGTGTTCCTGAACGCCGTCGGCGGCGTGAAGATCTCGGAGCCGGCGGCCGATCTGGCCG
TATTGCTGGCAATTCATTCGTCGCTGCGCAACAAGCCGTTGCCGCGCGGCATCGTGGCATTCGGCGAGGTCGGGCTGGCG
GGCGAAATCCGGCCGAGCCCGCGCGGTCAGGATCGTCTCAAGGAAGCCGCCAAACTGGGCTTTTCGATTGCGATCATCCC
GAAGGCGAATGCGCCGAAGCAACCCATCGACGGCCTCGAAGTGCATGCCGTCGACCGTTTGGAGCACGCGATTTCCGTCG
TGGCGGGGTTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4VEA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.401

100

0.497
  radA Streptococcus mitis SK321

48.837

94.092

0.46
  radA Streptococcus pneumoniae Rx1

48.837

94.092

0.46
  radA Streptococcus pneumoniae D39

48.837

94.092

0.46
  radA Streptococcus pneumoniae R6

48.837

94.092

0.46
  radA Streptococcus pneumoniae TIGR4

48.837

94.092

0.46
  radA Streptococcus mitis NCTC 12261

48.837

94.092

0.46