Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OYT13_RS02595 Genome accession   NZ_CP113827
Coordinates   568573..570060 (-) Length   495 a.a.
NCBI ID   WP_017232647.1    Uniprot ID   A0A9E9DAH4
Organism   Pandoraea sp. XJJ-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563573..575060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT13_RS02565 (OYT13_02565) mutY 563592..564749 (+) 1158 WP_017232653.1 A/G-specific adenine glycosylase -
  OYT13_RS02570 (OYT13_02570) rapZ 564765..565640 (-) 876 WP_017232652.1 RNase adapter RapZ -
  OYT13_RS02575 (OYT13_02575) - 565871..566182 (-) 312 WP_017232651.1 PsiF family protein -
  OYT13_RS02580 (OYT13_02580) hprK 566329..567294 (-) 966 WP_017232650.1 HPr(Ser) kinase/phosphatase -
  OYT13_RS02585 (OYT13_02585) ptsN 567392..567847 (-) 456 WP_026131716.1 PTS IIA-like nitrogen regulatory protein PtsN -
  OYT13_RS02590 (OYT13_02590) raiA 568077..568430 (-) 354 WP_017232648.1 ribosome-associated translation inhibitor RaiA -
  OYT13_RS02595 (OYT13_02595) rpoN/rpoN1 568573..570060 (-) 1488 WP_017232647.1 RNA polymerase factor sigma-54 Machinery gene
  OYT13_RS02600 (OYT13_02600) lptB 570155..570925 (-) 771 WP_026131715.1 LPS export ABC transporter ATP-binding protein -
  OYT13_RS02605 (OYT13_02605) lptA 570951..571574 (-) 624 WP_254440905.1 lipopolysaccharide transport periplasmic protein LptA -
  OYT13_RS02610 (OYT13_02610) lptC 571646..572305 (-) 660 WP_017232645.1 LPS export ABC transporter periplasmic protein LptC -
  OYT13_RS02615 (OYT13_02615) - 572329..572814 (-) 486 WP_051060087.1 HAD hydrolase family protein -
  OYT13_RS02620 (OYT13_02620) - 572922..573902 (-) 981 WP_017232643.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55303.24 Da        Isoelectric Point: 5.1872

>NTDB_id=763184 OYT13_RS02595 WP_017232647.1 568573..570060(-) (rpoN/rpoN1) [Pandoraea sp. XJJ-1]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGTIRVGTDGSLRNERGSSSSSTNDT
PESASGQDDARELDGETRFDDNARDGGNDWSLNDFARSGSASDDDDNERPQLHVDHPNLREHLLAQLRLTKASPRDRLLV
EFLIESLDEDGYLGTLLDEMQAEMSEELGLETEEINAALALLQSFDPAGVGARTPSECLRLQLQRLPASSVRTLSLRIVS
DHLELLAARDYTRLRRLLGVSEDSLRAAHQLIRSLDPFPGAAYGSPQADYVIPDVLVRKQGGGWTAELNPEVMPRLRINE
MYARILRNNRNAPGTGNLQQQLQEARWLIKNIQQRFDTILRVSQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHESTI
SRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQTPLSDSRIAELLAEQGFVVARRTVAKY
REAMRIPAVNLRKSL

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=763184 OYT13_RS02595 WP_017232647.1 568573..570060(-) (rpoN/rpoN1) [Pandoraea sp. XJJ-1]
ATGAAACCGACCCTTCAACTCCGCACCTCCCAGCACCTGACCCTCACGCCTCAGTTGCAGCAATCCATCCGATTGTTGCA
ACTGTCGACGCTCGAACTTCAGCAGGAAGTCGAGCACGCCCTCACCCAGAACCCGATGCTCGAGCGCGAGGACGATTGGC
TCGCCGGCACGATCCGTGTGGGCACGGACGGATCGCTGCGCAATGAGCGGGGCTCGTCGAGCAGCAGCACCAACGACACG
CCGGAATCGGCCAGCGGCCAGGACGACGCCCGCGAACTCGACGGCGAGACCCGCTTCGACGACAACGCGCGCGACGGTGG
CAACGACTGGAGCCTGAACGACTTTGCCCGCTCGGGCAGTGCGTCGGACGACGACGACAATGAGCGGCCGCAACTGCACG
TCGATCATCCCAATCTTCGCGAACACCTGCTCGCCCAGTTGCGCCTGACGAAAGCCAGCCCGCGCGATCGCCTGCTGGTG
GAATTCCTGATCGAATCGCTCGACGAAGACGGCTATCTCGGCACCCTGCTCGACGAAATGCAGGCGGAAATGTCCGAGGA
ACTTGGGCTCGAGACCGAAGAGATCAACGCCGCGCTCGCGCTGCTGCAGAGCTTCGACCCGGCAGGCGTGGGCGCCCGAA
CCCCGTCAGAATGCCTTCGCCTGCAACTCCAGCGGCTGCCGGCAAGCAGCGTGCGAACTCTGTCGCTGCGCATCGTTTCC
GATCATCTGGAGCTGCTCGCCGCGCGCGACTACACACGGTTGCGTCGTCTGCTGGGCGTGAGCGAGGACAGCCTGCGCGC
GGCGCATCAACTGATTCGCTCGCTCGACCCGTTCCCGGGCGCCGCCTACGGCTCGCCCCAGGCGGATTACGTCATCCCCG
ACGTGCTCGTGCGCAAGCAAGGCGGCGGCTGGACCGCCGAACTCAATCCCGAGGTCATGCCGCGCCTGCGCATCAATGAA
ATGTATGCGCGCATCCTTCGCAACAACCGCAATGCGCCGGGAACCGGCAACCTGCAGCAGCAACTTCAGGAAGCGCGCTG
GCTCATCAAGAACATCCAACAGCGGTTCGACACGATCCTGCGCGTGTCGCAGGCGATCGTCGAGCGTCAGAAGAACTTCT
TCACGCATGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAAATTGCTGATACGCTGGGTTTACATGAATCCACGATT
TCACGCGTGACAACCAGTAAGTACATGCTCACTCCATTCGGAACCTTCGAGCTTAAGTACTTCTTTGGTTCACACGTGGC
CACGGAAGCCGGGGGCGCCGCCTCATCGACCGCCATCCGCGCACTCATCAAGCAACTCATAGGAGCAGAAGATCCGCAGA
CCCCCCTTTCCGACAGCCGTATCGCGGAGCTGCTGGCAGAGCAAGGGTTCGTGGTAGCGCGACGCACCGTCGCGAAATAC
CGCGAAGCCATGCGCATTCCCGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-493)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(133-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.465

100

0.683