Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OYT13_RS02485 Genome accession   NZ_CP113827
Coordinates   548112..549536 (-) Length   474 a.a.
NCBI ID   WP_268567199.1    Uniprot ID   A0A9E9IC94
Organism   Pandoraea sp. XJJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 543112..554536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT13_RS02460 (OYT13_02460) rpoH 543813..544751 (-) 939 WP_026131720.1 RNA polymerase sigma factor RpoH -
  OYT13_RS02465 (OYT13_02465) - 544972..545355 (+) 384 WP_017232672.1 nuclear transport factor 2 family protein -
  OYT13_RS02470 (OYT13_02470) ybiB 545557..546513 (-) 957 WP_261939302.1 DNA-binding protein YbiB -
  OYT13_RS02475 (OYT13_02475) maiA 546712..547359 (+) 648 WP_268567198.1 maleylacetoacetate isomerase -
  OYT13_RS02480 (OYT13_02480) - 547368..547994 (+) 627 WP_017232669.1 LysE/ArgO family amino acid transporter -
  OYT13_RS02485 (OYT13_02485) pilA 548112..549536 (-) 1425 WP_268567199.1 signal recognition particle-docking protein FtsY Machinery gene
  OYT13_RS02490 (OYT13_02490) - 549708..551126 (+) 1419 WP_017232667.1 pitrilysin family protein -
  OYT13_RS02495 (OYT13_02495) - 551139..552587 (+) 1449 WP_268567200.1 pitrilysin family protein -
  OYT13_RS02500 (OYT13_02500) - 552711..553622 (-) 912 WP_327198114.1 ABC transporter permease -
  OYT13_RS02505 (OYT13_02505) nodI 553615..554532 (-) 918 WP_026131719.1 nodulation factor ABC transporter ATP-binding protein NodI -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 49342.55 Da        Isoelectric Point: 4.7547

>NTDB_id=763183 OYT13_RS02485 WP_268567199.1 548112..549536(-) (pilA) [Pandoraea sp. XJJ-1]
MFSFFKRFKSGGNKAAETSPASTESLASDALAPSPEIPETPASPSLPVEDAAAKADIAPAVVPASVPAEAAQAPTAPIDA
APPPVTPVQNAVPSEPAQANVPSLITPAQSAPTFAPQIAPEQAELAEPVEPIEPIEPIAPISSIEPAAPPPAVVVKDAHG
DAIGEIVAAPAQAPAAKRSWLTRLKAGLSKTSAGLTGIFIGVKVDENLFEELEDALLMSDAGVEATAFLIGALRKKVKTD
RLTEGEQVKRALHDLLVELLQPLEQSLVLGRESPMVVMIAGVNGAGKTTSIGKLAKHFQHYGQSVLLAAGDTFRAAAREQ
LAIWGERNNVAVVSQENGDPAAVVFDAVTAARARKIDIVMADTAGRLPTQLHLMEELKKIRRVLGKAAEGAPHEVLLVID
ANTGQNALTQVKAFDDALQLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAREFADALLG

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=763183 OYT13_RS02485 WP_268567199.1 548112..549536(-) (pilA) [Pandoraea sp. XJJ-1]
ATGTTCAGTTTCTTCAAGCGCTTCAAGTCGGGCGGTAACAAAGCCGCCGAGACGAGTCCCGCATCGACCGAATCCCTCGC
GTCCGACGCGCTGGCGCCATCGCCGGAAATCCCGGAAACGCCCGCTTCGCCAAGCTTGCCGGTCGAAGACGCTGCAGCGA
AGGCCGACATCGCACCGGCCGTCGTGCCCGCTAGCGTGCCGGCCGAAGCCGCGCAGGCACCCACCGCACCCATCGACGCC
GCGCCCCCGCCCGTCACCCCGGTCCAAAATGCGGTGCCGTCCGAACCGGCGCAGGCGAATGTCCCATCGCTCATCACGCC
GGCGCAGTCCGCGCCCACGTTTGCGCCGCAAATCGCGCCCGAACAGGCGGAACTGGCGGAACCCGTCGAGCCGATTGAGC
CGATTGAGCCCATTGCGCCGATATCGTCGATCGAGCCGGCCGCACCGCCCCCGGCCGTCGTTGTCAAGGATGCCCACGGC
GACGCCATCGGCGAGATCGTCGCGGCCCCGGCCCAAGCCCCGGCCGCCAAACGCTCCTGGCTCACGCGCCTGAAGGCGGG
ACTGTCGAAGACGAGCGCCGGTCTCACGGGCATCTTCATCGGCGTGAAAGTCGACGAGAACCTGTTCGAGGAACTGGAAG
ACGCGCTGCTGATGAGCGACGCCGGCGTGGAAGCCACGGCTTTCCTGATCGGCGCCCTGCGCAAGAAGGTCAAGACTGAC
CGGCTGACCGAAGGCGAGCAGGTCAAGCGCGCGCTGCACGATCTGCTGGTCGAATTGCTGCAGCCGTTGGAACAGAGCCT
GGTTCTCGGTCGCGAGTCGCCGATGGTCGTGATGATCGCGGGCGTGAACGGCGCGGGCAAGACGACAAGCATCGGCAAGC
TCGCCAAACACTTCCAGCACTACGGCCAGTCCGTGCTGCTCGCCGCCGGCGACACCTTCCGCGCGGCGGCACGAGAACAA
CTGGCGATCTGGGGCGAGCGCAACAACGTCGCCGTCGTCTCACAGGAGAACGGCGACCCGGCCGCCGTCGTGTTCGACGC
TGTGACTGCCGCACGCGCGCGCAAGATCGACATCGTGATGGCCGACACCGCTGGCCGACTGCCCACACAATTGCATCTGA
TGGAAGAGTTGAAGAAGATCAGGCGCGTGTTGGGCAAAGCTGCCGAGGGCGCACCGCACGAGGTGCTGCTCGTGATCGAC
GCCAACACGGGACAAAACGCGCTCACGCAGGTCAAGGCGTTCGACGACGCGCTGCAACTCACCGGCCTCATCGTGACAAA
GCTCGACGGCACGGCCAAGGGCGGCATTCTCGCCGCCATTGCGCGTCAGCGTCCGGTGCCGGTGTACTTCATCGGCGTGG
GCGAAAAGGTCGAGGATCTGCAGCCGTTCTCGGCGCGCGAATTCGCCGACGCCTTGCTCGGCTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(195-254)

SRP54-type protein, GTPase domain (SRP54)

(274-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.599

100

0.481