Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   M2Z51_RS05370 Genome accession   NZ_AP024967
Coordinates   1164220..1164834 (+) Length   204 a.a.
NCBI ID   WP_000580350.1    Uniprot ID   A0ABX9FGD2
Organism   Vibrio cholerae strain V130003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1159220..1169834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS05345 (V130003_10520) - 1159407..1160621 (-) 1215 WP_001908039.1 EAL and HDOD domain-containing protein -
  M2Z51_RS05350 (V130003_10530) lpxH 1160687..1161457 (-) 771 WP_000556998.1 UDP-2,3-diacylglucosamine diphosphatase -
  M2Z51_RS05355 (V130003_10540) - 1161498..1161992 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  M2Z51_RS05360 (V130003_10550) cysS 1162138..1163517 (+) 1380 WP_000913182.1 cysteine--tRNA ligase -
  M2Z51_RS05365 (V130003_10560) ruvC 1163605..1164126 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  M2Z51_RS05370 (V130003_10570) ruvA 1164220..1164834 (+) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  M2Z51_RS05375 (V130003_10580) ruvB 1164891..1165895 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  M2Z51_RS05380 (V130003_10600) cydA 1166350..1167936 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  M2Z51_RS05385 (V130003_10610) cydB 1167954..1169090 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  M2Z51_RS05390 cydX 1169103..1169210 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  M2Z51_RS05395 ybgE 1169203..1169520 (+) 318 WP_001286620.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22049.75 Da        Isoelectric Point: 5.0954

>NTDB_id=76318 M2Z51_RS05370 WP_000580350.1 1164220..1164834(+) (ruvA) [Vibrio cholerae strain V130003]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=76318 M2Z51_RS05370 WP_000580350.1 1164220..1164834(+) (ruvA) [Vibrio cholerae strain V130003]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCGATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTTGTGC
GGGAAGATGCGCAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCAAAAATGGGGCTCGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTGATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACTCCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment