Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QMK10_RS06480 Genome accession   NZ_CP125388
Coordinates   1252048..1253850 (-) Length   600 a.a.
NCBI ID   WP_002937791.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC25     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1247048..1258850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK10_RS06455 (QMK10_06455) - 1247176..1248375 (+) 1200 WP_283151620.1 MFS transporter -
  QMK10_RS06460 (QMK10_06460) ciaC 1248432..1248752 (+) 321 WP_283151621.1 invasion antigen CiaC -
  QMK10_RS06465 (QMK10_06465) hemE 1248932..1249954 (+) 1023 WP_002856507.1 uroporphyrinogen decarboxylase -
  QMK10_RS06470 (QMK10_06470) - 1249951..1250853 (+) 903 WP_002894886.1 radical SAM protein -
  QMK10_RS06475 (QMK10_06475) - 1250850..1252046 (-) 1197 WP_002937792.1 hypothetical protein -
  QMK10_RS06480 (QMK10_06480) uvrC 1252048..1253850 (-) 1803 WP_002937791.1 excinuclease ABC subunit UvrC Machinery gene
  QMK10_RS06485 (QMK10_06485) - 1253843..1254338 (-) 496 Protein_1257 hypothetical protein -
  QMK10_RS06490 (QMK10_06490) guaA 1254477..1256012 (+) 1536 WP_057100416.1 glutamine-hydrolyzing GMP synthase -
  QMK10_RS06495 (QMK10_06495) - 1256098..1257558 (+) 1461 WP_002933663.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69702.73 Da        Isoelectric Point: 9.3105

>NTDB_id=763136 QMK10_RS06480 WP_002937791.1 1252048..1253850(-) (uvrC) [Campylobacter jejuni strain SKBC25]
MTKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEETVHLEFITTNSE
ADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
ASCKSPCIFYQISRCLAPCDKRISREKYLEILDEAMHALLNPSILLKNLEKQMLILAQNENYEEAAKVRDQIATIKDLEV
KVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVY
EEFEDRMLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPNDIEIFDNS
HLQGVANVGAMVTYSANSWDKSKYRKFHLKHKNDYDQMREVLMRRALDFDKIPPPDLWLIDGGKALLDLAKEIIVSSGAN
VDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLS
SGVIQKLLAYYGNFESIYKADFKDLAMLVGKKVAQKIKEN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=763136 QMK10_RS06480 WP_002937791.1 1252048..1253850(-) (uvrC) [Campylobacter jejuni strain SKBC25]
TTGACTAAAGAGAATTTAGAAAATGAGTTAAAAACTCTTCCTAATAGTGCTGGAGTGTATCAATACTTCAATCAAGAAGG
AAAGCTTTTATATGTAGGTAAGGCTAAAAATCTTAAAAATCGTGTCAAATCTTATTTCGCTTTTACTCCAAATTTACATG
CAAACCCAAGAAATTCTTTAAGAATTCAAAAAATGATTGAAGAAACAGTGCATTTGGAATTTATCACTACTAATTCAGAA
GCCGATGCTTTGATTTTAGAAAATTCTTTTATCAAACAACTGCATCCAAAATATAATATTTTACTAAGAGATGATAAAAC
TTATCCTTATATTTATGTGGATTTTGAAGAAGAATTTCCACGCTTTGAGATCACTAGAAAATTAGTAAAAAAAAGCAAAA
TTAAATATTTTGGCCCTTTTTTTAAAGGCGCTAGAGAGCTTTTAGATGCGCTTTATTTATACTATCCTTTAAAGCAAAAA
GCAAGTTGTAAATCCCCTTGTATTTTTTATCAAATTTCTCGTTGTCTTGCACCTTGTGATAAACGCATCAGCAGGGAAAA
ATACCTTGAAATTTTAGATGAGGCTATGCACGCGCTTTTAAATCCTAGTATTTTGCTTAAAAACTTAGAAAAACAAATGC
TTATTTTAGCGCAAAATGAAAATTACGAAGAAGCAGCTAAAGTAAGAGATCAGATTGCAACGATTAAGGATTTAGAAGTT
AAGGTTGAAATAGATATTGCAAAATTAGAAGATTTTGAAGTATTTGCTTTAGCTTTTGAAAATTCCATGCTTTCAACCTT
GCGTTTTGTAGTGCAAAATGGAAAAATTATCAGTGTAAATTCTAAGATTACTCCTATAAAAAATGATATACAATGGGATA
AAAATGAAATTTATAAGCAACTGATTTTAGAAAATTTTAGCATGGATATTCCTTTGCTTGCAAATGTTATTTATGTTTAT
GAAGAATTTGAAGATAGAATGCTTTTAGAAGAAATTTTAAGCCAAAGGTTTGATAAAAAAATCAGTATTAAAATCCCTAA
AATAGGAGAAAAAAGAAGAATTTGTGATTTGGCTTTTCAAAATGCCCTTTTAAATATAGAAAAAGAGCAAAAAAATCATG
ATTTTACTATACAAAAAGAATTAAAGTCTTATTTTGAGCTTGAAAATTTACCAAATGATATAGAAATTTTTGATAATTCT
CATTTGCAAGGCGTGGCAAATGTTGGAGCTATGGTAACTTATAGTGCAAATTCTTGGGATAAGTCAAAATATCGCAAATT
TCATTTAAAACATAAAAATGATTATGATCAAATGCGTGAAGTTTTAATGCGTAGGGCTTTGGACTTTGATAAAATACCCC
CTCCTGATTTATGGCTTATAGATGGAGGCAAGGCTTTGCTTGATTTGGCTAAAGAAATCATTGTAAGTAGTGGGGCAAAT
GTCGATATTTTAGCTATTTCAAAAGAAAAAATCGATGCAAAAGCACATAGGGCTAAAGGAGGTGCTAGAGATAAAATTCA
TTCCTTAAAAGGAGAATTTAGCCTAAGTATTAACGATAAAAAACTACAATTCTTACAGAAATTAAGAGATGAAGCGCATC
GTTTTGCTATCAGCTTTCATCAAAATACTAAGAAAAAACAGGACTTGAATAGTTCTAAGCTTGTAAATTTAGGACTTAGT
TCAGGGGTTATACAAAAACTTTTAGCGTATTATGGAAATTTTGAATCTATATATAAGGCTGATTTTAAAGATCTTGCAAT
GCTTGTAGGCAAGAAAGTGGCACAAAAGATAAAGGAAAATTGA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(18-99)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-537)

UvrB/uvrC motif (UVR)

(205-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

45.96

99

0.455