Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OUI59_RS18085 Genome accession   NZ_CP113789
Coordinates   3632304..3632900 (-) Length   198 a.a.
NCBI ID   WP_074386392.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. tropica strain BSK_177V2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627304..3637900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUI59_RS18070 (OUI59_18070) helD 3627512..3629566 (-) 2055 WP_100729780.1 DNA helicase IV -
  OUI59_RS18075 (OUI59_18075) - 3629691..3630137 (+) 447 WP_100729781.1 YccF domain-containing protein -
  OUI59_RS18080 (OUI59_18080) yccS 3630155..3632290 (+) 2136 WP_100631488.1 YccS family putative transporter -
  OUI59_RS18085 (OUI59_18085) sxy/tfoX 3632304..3632900 (-) 597 WP_074386392.1 TfoX/Sxy family DNA transformation protein Regulator
  OUI59_RS18090 (OUI59_18090) sulA 3633251..3633760 (+) 510 WP_074386393.1 SOS-induced cell division inhibitor SulA -
  OUI59_RS18095 (OUI59_18095) ompA 3634113..3635165 (+) 1053 WP_008805892.1 porin OmpA -
  OUI59_RS18100 (OUI59_18100) matP 3635273..3635725 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  OUI59_RS18105 (OUI59_18105) - 3635911..3637668 (+) 1758 WP_136087329.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22794.29 Da        Isoelectric Point: 9.6690

>NTDB_id=763095 OUI59_RS18085 WP_074386392.1 3632304..3632900(-) (sxy/tfoX) [Klebsiella variicola subsp. tropica strain BSK_177V2]
MRKLVCPRFPQFQACVSPLGQLYSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDEALWRDETQLFRLSLLSWQSAQREKYHRRESGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSVNVLLALEGAIVGVHTAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=763095 OUI59_RS18085 WP_074386392.1 3632304..3632900(-) (sxy/tfoX) [Klebsiella variicola subsp. tropica strain BSK_177V2]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTATATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGGGATATTTACCTGAGAGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGTAATCCTTTATTAACGCTACGCCGACACGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGAGGCATTGTGGCGCGATGAAACACAGCTTTTTCGGCTGTCGCTGCTGTCGTGGCAAAGCGCCCA
GCGTGAAAAGTACCACCGCCGGGAGTCTGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTGCGAGAAAACAAC
GCCTCCCTGTCGGTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACACCGCTGCACTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51