Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QMK08_RS03030 Genome accession   NZ_CP125386
Coordinates   583838..584221 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain SKBC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 578838..589221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS03010 (QMK08_03010) - 578917..580851 (-) 1935 WP_004309024.1 ribonuclease R family protein -
  QMK08_RS03015 (QMK08_03015) ilvC 580970..581992 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  QMK08_RS03020 (QMK08_03020) - 581996..583078 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  QMK08_RS03025 (QMK08_03025) dprA 583068..583841 (+) 774 WP_022552258.1 DNA-processing protein DprA Machinery gene
  QMK08_RS03030 (QMK08_03030) dprB 583838..584221 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  QMK08_RS03035 (QMK08_03035) - 584250..585089 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMK08_RS03040 (QMK08_03040) msrA 585265..585762 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMK08_RS03045 (QMK08_03045) ppa 585803..586321 (-) 519 WP_070240983.1 inorganic diphosphatase -
  QMK08_RS03050 (QMK08_03050) adk 586331..586909 (-) 579 WP_002855137.1 adenylate kinase -
  QMK08_RS03055 (QMK08_03055) aspS 586906..588657 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=763024 QMK08_RS03030 WP_002852281.1 583838..584221(+) (dprB) [Campylobacter jejuni strain SKBC41]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=763024 QMK08_RS03030 WP_002852281.1 583838..584221(+) (dprB) [Campylobacter jejuni strain SKBC41]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449