Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QMK09_RS06570 Genome accession   NZ_CP125383
Coordinates   1249349..1251151 (-) Length   600 a.a.
NCBI ID   WP_052794319.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC1     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1244349..1256151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS06545 (QMK09_06545) - 1244475..1245674 (+) 1200 WP_002875337.1 MFS transporter -
  QMK09_RS06550 (QMK09_06550) ciaC 1245730..1246050 (+) 321 WP_002860457.1 invasion antigen CiaC -
  QMK09_RS06555 (QMK09_06555) hemE 1246233..1247246 (+) 1014 WP_002875336.1 uroporphyrinogen decarboxylase -
  QMK09_RS06560 (QMK09_06560) - 1247252..1248154 (+) 903 WP_002868553.1 radical SAM protein -
  QMK09_RS06565 (QMK09_06565) - 1248151..1249347 (-) 1197 WP_002854153.1 hypothetical protein -
  QMK09_RS06570 (QMK09_06570) uvrC 1249349..1251151 (-) 1803 WP_052794319.1 excinuclease ABC subunit UvrC Machinery gene
  QMK09_RS06575 (QMK09_06575) - 1251144..1251638 (-) 495 WP_002867358.1 hypothetical protein -
  QMK09_RS06580 (QMK09_06580) guaA 1251777..1253312 (+) 1536 WP_218980277.1 glutamine-hydrolyzing GMP synthase -
  QMK09_RS06585 (QMK09_06585) - 1253398..1254858 (+) 1461 WP_002853236.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69698.80 Da        Isoelectric Point: 9.5563

>NTDB_id=762998 QMK09_RS06570 WP_052794319.1 1249349..1251151(-) (uvrC) [Campylobacter jejuni strain SKBC1]
MIKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEETIHLEFITTNSE
ADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
ASCKSPCIFYQISRCLAPCDKRISKEKYLEILDEAMRALLNPSILLKNLEKQMLILAQNENYEEAAKVRDQIATIKDLEV
KVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISANSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVY
EEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHGFTIQKELKSYFELENLPNDIEIFDNS
HLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFDKIPPPDLWLIDGGKALLDLAKEIIVSSGAN
VDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLS
SGVIQKLLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=762998 QMK09_RS06570 WP_052794319.1 1249349..1251151(-) (uvrC) [Campylobacter jejuni strain SKBC1]
TTGATTAAAGAGAATTTAGAAAATGAGTTAAAAACTCTTCCCAATAGTGCTGGAGTGTATCAATATTTTAATCAAGAAGG
AAAGCTTTTATATGTAGGCAAGGCTAAAAATCTTAAAAATCGTGTTAGATCTTATTTTGCTTTTACTCCAAATTTACATG
CAAACCCAAGAAATTCTTTAAGAATTCAAAAAATGATTGAAGAAACAATACATTTGGAATTTATCACTACTAATTCAGAG
GCTGATGCTTTGATTTTGGAAAATTCTTTTATCAAACAACTGCATCCAAAATATAATATTTTACTAAGAGATGATAAAAC
TTATCCTTATATTTATGTGGATTTTGAAGAAGAATTTCCACGCTTTGAGATCACTAGAAAATTGGTAAAAAAAAGCAAAA
TTAAATATTTTGGCCCTTTTTTTAAAGGTGCTAGAGAGCTTTTAGATGCGCTTTATTTATACTATCCTTTAAAGCAAAAA
GCAAGTTGTAAATCCCCTTGTATTTTTTATCAAATTTCTCGTTGTCTTGCGCCTTGTGATAAACGCATCAGCAAAGAAAA
ATACCTTGAAATTTTAGATGAGGCTATGCGTGCGCTTTTAAATCCTAGTATTTTGCTTAAAAACTTAGAAAAACAAATGC
TTATTTTAGCGCAAAATGAAAATTACGAAGAAGCAGCTAAAGTAAGAGATCAAATCGCAACAATTAAGGATTTAGAAGTT
AAGGTTGAAATAGATATTGCAAAATTAGAAGATTTTGAAGTATTTGCTTTAGCTTTTGAAAATTCCATGCTTTCAACCTT
GCGTTTTGTAGTGCAAAATGGAAAAATTATCAGTGCAAATTCTAAGATTACTCCTATAAAAAATGATATACAATGGGATA
AAAATGAAATTTATAAGCAATTGATTTTAGAAAATTTTAGTATGGACATTCCTTTGCTTGCAAATGTTATTTATGTTTAT
GAAGAATTTGAAGATAGAGTGCTTTTGGAAGAAATTTTAAGCCAAAGATTTGATAAAAAAATCAGTATTAAAATCCCTAA
AATAGGAGAAAAAAGAAGAATTTGTGATTTGGCTTTTCAAAATGCCCTTTTAAATATAGAAAAAGAGCAAAAAAATCATG
GTTTTACTATACAAAAAGAATTAAAGTCTTATTTTGAGCTTGAAAATTTACCAAATGATATAGAAATTTTTGACAATTCT
CATTTGCAAGGCGTGGCAAATGTTGGAGCTATGGTAACTTATAGAATAAATTCTTGGGATAAGTCAAAATATAGAAAATT
TCATTTAAAACATAAAAATGACTATGATCAAATGCGTGAAGTTTTAACGCGTAGGGCTTTGGACTTTGATAAAATACCTC
CTCCTGATTTATGGCTTATAGATGGGGGAAAGGCTTTGCTTGATTTGGCTAAAGAAATCATTGTAAGTAGTGGGGCAAAT
GTCGATATTTTAGCTATTTCAAAAGAAAAAATCGATGCAAAAGCACATAGGGCTAAAGGGGGTGCTAAGGATAAAATTCA
TTCCTTAAAAGGAGAATTTAGTCTAAGCATTAACGATAAAAAACTACAATTCTTACAGAAATTAAGAGATGAAGCACACC
GTTTTGCTATCAGCTTTCATCAAAATACTAAGAAAAAACAGGACTTGAAAAGTTCTAAGCTTGCAAATTTAGGACTTAGT
TCAGGGGTTATACAAAAACTTTTAGCGTATTATGGAAATTTTGAATCTATATATAAGGCTGATTTTAAAGATCTTACAAT
GCTTGTAGGCAGGAAAGCGGCGCAAAAGATAAAGGAAAATTGA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(18-99)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-537)

UvrB/uvrC motif (UVR)

(205-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

47.251

97

0.458