Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OXV09_RS13615 Genome accession   NZ_CP113539
Coordinates   2791741..2792346 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain FFL     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786741..2797346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXV09_RS13600 helD 2786958..2789012 (-) 2055 WP_001524469.1 DNA helicase IV -
  OXV09_RS13605 - 2789136..2789582 (+) 447 WP_001261222.1 YccF domain-containing protein -
  OXV09_RS13610 yccS 2789601..2791754 (+) 2154 WP_000950881.1 YccS family putative transporter -
  OXV09_RS13615 sxy/tfoX 2791741..2792346 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  OXV09_RS13620 sulA 2792563..2793072 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  OXV09_RS13625 ompA 2793429..2794481 (+) 1053 WP_001670727.1 porin OmpA -
  OXV09_RS13630 matP 2794553..2795005 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  OXV09_RS13635 - 2795191..2796951 (+) 1761 WP_023255440.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=762960 OXV09_RS13615 WP_001202375.1 2791741..2792346(-) (sxy/tfoX) [Salmonella enterica strain FFL]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=762960 OXV09_RS13615 WP_001202375.1 2791741..2792346(-) (sxy/tfoX) [Salmonella enterica strain FFL]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751