Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OXV04_RS13700 Genome accession   NZ_CP113537
Coordinates   2821750..2822355 (-) Length   201 a.a.
NCBI ID   WP_126524153.1    Uniprot ID   -
Organism   Salmonella enterica strain YZY     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2816750..2827355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXV04_RS13685 helD 2816967..2819021 (-) 2055 WP_126524152.1 DNA helicase IV -
  OXV04_RS13690 - 2819145..2819591 (+) 447 WP_001261222.1 YccF domain-containing protein -
  OXV04_RS13695 yccS 2819610..2821763 (+) 2154 WP_000950876.1 YccS family putative transporter -
  OXV04_RS13700 sxy/tfoX 2821750..2822355 (-) 606 WP_126524153.1 TfoX/Sxy family DNA transformation protein Regulator
  OXV04_RS13705 sulA 2822572..2823081 (+) 510 WP_023195822.1 SOS-induced cell division inhibitor SulA -
  OXV04_RS13710 ompA 2823438..2824490 (+) 1053 WP_001670727.1 porin OmpA -
  OXV04_RS13715 matP 2824562..2825014 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  OXV04_RS13720 - 2825200..2826960 (+) 1761 WP_126524154.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23173.95 Da        Isoelectric Point: 9.0103

>NTDB_id=762915 OXV04_RS13700 WP_126524153.1 2821750..2822355(-) (sxy/tfoX) [Salmonella enterica strain YZY]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVNESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=762915 OXV04_RS13700 WP_126524153.1 2821750..2822355(-) (sxy/tfoX) [Salmonella enterica strain YZY]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGAATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746