Detailed information NTG0762883

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMK41_RS07090
• Genome accession: NZ_CP125367
• Coordinates: 1501362..1502366 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ZY1710
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1496362..1507366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK41_RS07060 (QMK41_07060)	fghA	1496454..1497305 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
QMK41_RS07065 (QMK41_07065)	ispF	1497376..1497849 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMK41_RS07070 (QMK41_07070)	truD	1497846..1498913 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
QMK41_RS07075 (QMK41_07075)	surE	1498901..1499650 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QMK41_RS07080 (QMK41_07080)	-	1499683..1500318 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMK41_RS07085 (QMK41_07085)	-	1500364..1501257 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
QMK41_RS07090 (QMK41_07090)	rpoS	1501362..1502366 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QMK41_RS07095 (QMK41_07095)	fdxA	1502792..1503115 (-)	324	WP_003092272.1	ferredoxin FdxA	-
QMK41_RS07100 (QMK41_07100)	mutS	1503182..1505749 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QMK41_RS07105 (QMK41_07105)	-	1505875..1506882 (-)	1008	WP_191519407.1	PD40 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=762883 QMK41_RS07090 WP_003113871.1 1501362..1502366(+) (rpoS) [Pseudomonas aeruginosa strain ZY1710]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=762883 QMK41_RS07090 WP_003113871.1 1501362..1502366(+) (rpoS) [Pseudomonas aeruginosa strain ZY1710]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTTGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653