Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OXV08_RS13480 Genome accession   NZ_CP113534
Coordinates   2769583..2770188 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain ZYX     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2764583..2775188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXV08_RS13465 helD 2764800..2766854 (-) 2055 WP_017465794.1 DNA helicase IV -
  OXV08_RS13470 - 2766978..2767424 (+) 447 WP_001261222.1 YccF domain-containing protein -
  OXV08_RS13475 yccS 2767443..2769596 (+) 2154 WP_220535972.1 YccS family putative transporter -
  OXV08_RS13480 sxy/tfoX 2769583..2770188 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  OXV08_RS13485 sulA 2770405..2770914 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  OXV08_RS13490 ompA 2771271..2772323 (+) 1053 WP_001670727.1 porin OmpA -
  OXV08_RS13495 matP 2772395..2772847 (-) 453 WP_268653036.1 macrodomain Ter protein MatP -
  OXV08_RS13500 - 2773033..2774793 (+) 1761 WP_000156459.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=762846 OXV08_RS13480 WP_001202375.1 2769583..2770188(-) (sxy/tfoX) [Salmonella enterica strain ZYX]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=762846 OXV08_RS13480 WP_001202375.1 2769583..2770188(-) (sxy/tfoX) [Salmonella enterica strain ZYX]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751