Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   OTS06_RS08290 Genome accession   NZ_CP113533
Coordinates   1777638..1778777 (-) Length   379 a.a.
NCBI ID   WP_011706550.1    Uniprot ID   A0AAI9Q2R8
Organism   Aeromonas hydrophila strain SHSK47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1772638..1783777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTS06_RS08270 feoB 1772840..1775113 (+) 2274 WP_346815436.1 Fe(2+) transporter permease subunit FeoB -
  OTS06_RS08275 - 1775110..1775352 (+) 243 WP_011706553.1 FeoC-like transcriptional regulator -
  OTS06_RS08280 - 1775468..1775947 (-) 480 WP_346815437.1 WbuC family cupin fold metalloprotein -
  OTS06_RS08285 glgC 1776083..1777354 (-) 1272 WP_011706551.1 glucose-1-phosphate adenylyltransferase -
  OTS06_RS08290 pilU 1777638..1778777 (-) 1140 WP_011706550.1 type IVa pilus ATPase TapW Machinery gene
  OTS06_RS08295 - 1778838..1779194 (-) 357 WP_005302630.1 DMT family protein -
  OTS06_RS08300 - 1779308..1780039 (+) 732 WP_060390211.1 transporter substrate-binding domain-containing protein -
  OTS06_RS08305 btuC 1780140..1781147 (+) 1008 WP_257685385.1 vitamin B12 ABC transporter permease BtuC -
  OTS06_RS08310 - 1781134..1781919 (+) 786 WP_346815438.1 ATP-binding cassette domain-containing protein -
  OTS06_RS08315 aac(6') 1781941..1782399 (-) 459 WP_346815439.1 aminoglycoside 6'-N-acetyltransferase -
  OTS06_RS08320 - 1782406..1783470 (-) 1065 WP_045527311.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42264.32 Da        Isoelectric Point: 6.4290

>NTDB_id=762812 OTS06_RS08290 WP_011706550.1 1777638..1778777(-) (pilU) [Aeromonas hydrophila strain SHSK47]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGGLRPLSETPLEPGEVARIADAIMDGEQKQQFERELEMNLAISLPQIGR
FRINIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTSDGGRRAAVEIMLGTHTIRDMIKRGEFGGLKEVMEKSKALGMVTFDSAL
FDLVVEGVIDEEEAVKNADSANNLRLKIKLWKEKGQIASSSDATGWSLEPTKDEKDDLF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=762812 OTS06_RS08290 WP_011706550.1 1777638..1778777(-) (pilU) [Aeromonas hydrophila strain SHSK47]
ATGGAATTGCGAGACATGCTACAGATCCTGGCCAAGCAGGATGGCTCCGACCTCTATCTGTCGACCGGCGCCCCCCCTTG
CGCCAAGTTCAACGGCGGCCTGCGTCCGCTCAGTGAGACGCCGCTCGAACCCGGCGAGGTGGCCAGAATAGCCGACGCCA
TCATGGACGGCGAGCAAAAGCAGCAGTTCGAGCGGGAGCTGGAGATGAACCTCGCCATCTCGCTGCCCCAGATCGGCCGC
TTTCGGATCAACATCTTCAAGCAGCGCAACGAAGTGTCGCTGGTGGCACGCAACATCAAGACCGAGATCCCCCGCTTCGA
GGATCTGAAACTGCCCCCCGTGCTGCTCGACACCATCATGGAGAAGCGCGGCCTGGTGCTGTTCGTCGGCGGTACCGGCT
CGGGCAAGTCCACCTCGCTCGCGGCCCTCATCGACCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTGCACCGCCACCGCAAGAGCATCATCAACCAGCGCGAGGTGGGGGTGGATACCCGCAGCTTCCACGC
AGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATCGGTGAAATTCGCGATCGCGAGACCATGGAGCACG
CGCTGGCCTTCTCCGAGACCGGCCACCTGGCGATTTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGGAAGAGCGCCGGCCCCAGCTGCTCAACGACCTTGGCAACAACCTCAAGGCGTTTGTCTCCCAGCG
GCTGGTCAAAACCAGCGACGGTGGCCGCCGGGCGGCGGTGGAGATCATGCTGGGCACCCACACCATTCGCGACATGATCA
AACGCGGCGAATTTGGCGGCCTCAAGGAGGTGATGGAAAAATCCAAGGCGCTCGGCATGGTCACCTTCGACAGCGCCCTG
TTCGATCTGGTGGTCGAGGGCGTGATCGACGAGGAGGAGGCGGTGAAGAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GATCAAGCTGTGGAAGGAGAAGGGCCAGATCGCCAGCAGCAGCGATGCCACCGGCTGGAGCCTCGAGCCCACCAAGGATG
AAAAAGACGATCTGTTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.133

98.945

0.536
  pilU Acinetobacter baylyi ADP1

53.521

93.668

0.501
  pilU Vibrio cholerae strain A1552

50.286

92.348

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.076

93.14

0.383
  pilT Pseudomonas aeruginosa PAK

40.698

90.765

0.369
  pilT Legionella pneumophila strain ERS1305867

41.916

88.127

0.369
  pilT Legionella pneumophila strain Lp02

41.916

88.127

0.369
  pilT Pseudomonas stutzeri DSM 10701

40.116

90.765

0.364
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.441

87.863

0.364
  pilT Vibrio cholerae strain A1552

41.441

87.863

0.364
  pilT Acinetobacter baumannii D1279779

41.018

88.127

0.361
  pilT Acinetobacter baumannii strain A118

41.018

88.127

0.361
  pilT Acinetobacter nosocomialis M2

41.018

88.127

0.361