Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OU989_RS21775 Genome accession   NZ_CP113527
Coordinates   4311760..4313136 (-) Length   458 a.a.
NCBI ID   WP_274794976.1    Uniprot ID   A0AAJ5UT82
Organism   Lysinibacillus irui strain IRB4-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4306760..4318136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU989_RS21755 (OU989_21785) gltX 4307446..4308906 (-) 1461 WP_274794972.1 glutamate--tRNA ligase -
  OU989_RS21760 (OU989_21790) ispF 4308996..4309472 (-) 477 WP_274794973.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OU989_RS21765 (OU989_21795) ispD 4309702..4310382 (-) 681 WP_274794974.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OU989_RS21770 (OU989_21800) - 4310394..4311479 (-) 1086 WP_274794975.1 PIN/TRAM domain-containing protein -
  OU989_RS21775 (OU989_21805) radA 4311760..4313136 (-) 1377 WP_274794976.1 DNA repair protein RadA Machinery gene
  OU989_RS21780 (OU989_21810) - 4313228..4315672 (-) 2445 WP_274794977.1 ATP-dependent Clp protease ATP-binding subunit -
  OU989_RS21785 (OU989_21815) - 4315662..4316771 (-) 1110 WP_274794978.1 protein arginine kinase -
  OU989_RS21790 (OU989_21820) - 4316768..4317310 (-) 543 WP_274794979.1 UvrB/UvrC motif-containing protein -
  OU989_RS21795 (OU989_21825) - 4317324..4317794 (-) 471 WP_274794980.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50100.86 Da        Isoelectric Point: 7.3824

>NTDB_id=762790 OU989_RS21775 WP_274794976.1 4311760..4313136(-) (radA) [Lysinibacillus irui strain IRB4-01]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEVVAKGSRGAFQHSATVTQKALPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVVSQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPASNIGGWDFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=762790 OU989_RS21775 WP_274794976.1 4311760..4313136(-) (radA) [Lysinibacillus irui strain IRB4-01]
TTGGCGAAGAAAAAAACGAAATTCGTATGCTCGGGCTGTGGCTATGAATCTGCTAAATGGATGGGTAGATGTCCAGGATG
TGGAGAATGGAATAAAATGGTGGAAGAAGTAGAAGTCGTAGCAAAAGGATCACGTGGCGCATTTCAACATTCTGCTACAG
TAACCCAGAAAGCCCTTCCGATTATACAGGTTGAAGCAACTGAAGAATCCCGTGTTGCGACGGAAATGGGCGAATTGAAC
CGCGTTCTAGGTGGTGGCATCGTACCGGGCTCTCTAGTGTTAATAGGTGGTGATCCTGGGATAGGGAAATCTACTTTATT
ATTACAAGTTTCGGCTTTACTTTCGAATAAGGGGCATCGTGTACTTTATATTTCGGGTGAGGAATCCATTCGTCAAACGA
AGTTACGCGCAGAGCGTTTGGGGGTTGTTTCCCAGGAGCTTTACATCTATTCCGAAACGAACCTTGAATTTTTAAACCAA
ACAATTGATGAAGTACAGCCGAAATTTGTCATTGTCGACTCGATTCAAACGGTCTTCCATCCAGAGGTAACGAGTGCCCC
AGGAAGTGTCTCACAGGTCCGTGAATGTACAGCAGAGCTTATGAGAATTGCTAAGACAAAGGGTATTGCAATTTTCTTAG
TTGGACATGTAACAAAAGAAGGACAAATTGCCGGGCCTCGTATTTTAGAGCATATGGTGGATACCGTATTGTATTTTGAA
GGGGAAAGACATCATAACCATCGTATTCTACGAAGCCAAAAAAACCGCTTCGGCTCCACAAATGAAATTGCGATATTTGA
GATGCTTCAAGGAGGTTTAAAGGAAGTTTTAAATCCTTCTGAGCTATTTTTGCAGGAGCGCTCACAAGGAGCTGCGGGCT
CAACTATCGTTGCATCGATGGAGGGGACAAGGCCAATTCTTGTTGAGATTCAGTCTTTAGTTACACCTACAAGCTTTAAC
TATCCTAAACGTATGGCTACTGGTGTTGACCAAAACCGCGTGCAACTACTAATGGCGGTACTAGAAAAGCGGATGGGTCT
CATGCTACAAGCCCAGGACGCATATATTAAAGTTGCTGGTGGCGTCAAACTGGATGAGCCAGCTATTGATTTAGCTGTTT
TAACTAGCATTGTCTCTAGTTTTAAGGATCAAGCAGTACGAGCAACGGACTGTTTTATTGGTGAAGTAGGGCTAACAGGT
GAGGTGCGTCGTGTATCCCGTATAGAACAACGTGTTATTGAGGCAGCGAAGCTAGGTTTTAAAAGAGCCTTTATTCCCGC
ATCTAATATTGGTGGTTGGGATTTTCCACAGGGAATTGAAATTGTCGGTGTAGAAACGATAAAAGATGCGCTTAATGCCT
GCTTCAGAGAGTTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.575

98.69

0.697
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62