Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OU989_RS20340 Genome accession   NZ_CP113527
Coordinates   4045282..4046232 (-) Length   316 a.a.
NCBI ID   WP_274794739.1    Uniprot ID   A0AAJ5UUU2
Organism   Lysinibacillus irui strain IRB4-01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4040282..4051232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU989_RS20310 (OU989_20340) - 4040292..4041194 (-) 903 WP_274794731.1 polyprenyl synthetase family protein -
  OU989_RS20315 (OU989_20345) - 4041545..4042081 (+) 537 WP_274794733.1 hypothetical protein -
  OU989_RS20320 (OU989_20350) - 4042175..4042489 (-) 315 WP_274794734.1 antibiotic biosynthesis monooxygenase -
  OU989_RS20325 (OU989_20355) - 4042491..4043510 (-) 1020 WP_274794735.1 siderophore ABC transporter substrate-binding protein -
  OU989_RS20330 (OU989_20360) - 4043578..4044339 (-) 762 WP_274794736.1 ABC transporter ATP-binding protein -
  OU989_RS20335 (OU989_20365) - 4044336..4045289 (-) 954 WP_274794738.1 iron chelate uptake ABC transporter family permease subunit -
  OU989_RS20340 (OU989_20370) ceuB 4045282..4046232 (-) 951 WP_274794739.1 ABC transporter permease Machinery gene
  OU989_RS20345 (OU989_20375) - 4046501..4047574 (-) 1074 WP_274794740.1 hypothetical protein -
  OU989_RS20350 (OU989_20380) menC 4047624..4048730 (-) 1107 WP_274794741.1 o-succinylbenzoate synthase -
  OU989_RS20355 (OU989_20385) - 4048752..4049576 (-) 825 WP_274794742.1 GNAT family N-acetyltransferase -
  OU989_RS20360 (OU989_20390) - 4049576..4050721 (-) 1146 WP_274794743.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34842.02 Da        Isoelectric Point: 10.1462

>NTDB_id=762789 OU989_RS20340 WP_274794739.1 4045282..4046232(-) (ceuB) [Lysinibacillus irui strain IRB4-01]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMYGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYISIPVLILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=762789 OU989_RS20340 WP_274794739.1 4045282..4046232(-) (ceuB) [Lysinibacillus irui strain IRB4-01]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATTGTGTCGCTATTTATAGGAGTAGTTGATATAAAGCC
TAGTGACCTATTAGACTTCCAATCAGAAGAAACAAGACTATTTTTAATTAGTCGAGTACCTAGACTTGTTGCAATTTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTATCACCAACTACAGCT
GGTACGTTAGATGCCACTCGGTTGGGTGTCTTGATTTCCATGATGTTCTTTACGAACGTCACGTATTTTCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAATCGAATAAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTACGGAAATATTTTGTCCTCTGTTACAACGTTCTTTGCGTACAAGGCGAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTATGAACTGTTATACATAAGTATACC
AGTACTGATTTTAGCTTACATTTACGCAAACCGTTTTACAGTGGCTGGAATGGGAGAGGATTTTGCTAAAAATCTTGGTC
TATCCTACAAATTTGTAGTGAACTTAGGCTTAGTATTGGTAGCTCTTATCTCTACAACAGTGGTGTTAACAGTCGGTGTC
ATTCCATTCCTAGGTTTGATCATTCCGAATATTATTTCACTGTTTAAAGGTGATAATTTGGCAAAGACATTGCCGCATAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGCGATATTTTAGGACGCGTCTTGATTTTCCCTTATGAAATACCAATTA
GTATGACTGTTGGTGTCATCGGAAGTGCAATCTTCCTATTTATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525