Detailed information NTG0762780

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMK42_RS07090
• Genome accession: NZ_CP125365
• Coordinates: 1501622..1502626 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ZY36
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1496622..1507626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK42_RS07060 (QMK42_07060)	fghA	1496714..1497565 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
QMK42_RS07065 (QMK42_07065)	ispF	1497636..1498109 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMK42_RS07070 (QMK42_07070)	truD	1498106..1499173 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
QMK42_RS07075 (QMK42_07075)	surE	1499161..1499910 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QMK42_RS07080 (QMK42_07080)	-	1499943..1500578 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMK42_RS07085 (QMK42_07085)	-	1500624..1501517 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
QMK42_RS07090 (QMK42_07090)	rpoS	1501622..1502626 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QMK42_RS07095 (QMK42_07095)	fdxA	1503052..1503375 (-)	324	WP_003092272.1	ferredoxin FdxA	-
QMK42_RS07100 (QMK42_07100)	mutS	1503442..1506009 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QMK42_RS07105 (QMK42_07105)	-	1506135..1507142 (-)	1008	WP_191519407.1	PD40 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=762780 QMK42_RS07090 WP_003113871.1 1501622..1502626(+) (rpoS) [Pseudomonas aeruginosa strain ZY36]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=762780 QMK42_RS07090 WP_003113871.1 1501622..1502626(+) (rpoS) [Pseudomonas aeruginosa strain ZY36]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTTGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653