Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OU989_RS13820 Genome accession   NZ_CP113527
Coordinates   2736458..2738149 (-) Length   563 a.a.
NCBI ID   WP_274793619.1    Uniprot ID   A0AAJ5RPJ3
Organism   Lysinibacillus irui strain IRB4-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2731458..2743149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU989_RS13800 (OU989_13815) - 2733181..2733372 (-) 192 WP_274793615.1 hypothetical protein -
  OU989_RS13805 (OU989_13820) - 2733606..2733920 (-) 315 WP_274793616.1 hypothetical protein -
  OU989_RS13810 (OU989_13825) spo0A 2734222..2735013 (-) 792 WP_274793617.1 sporulation transcription factor Spo0A -
  OU989_RS13815 (OU989_13830) - 2735389..2736336 (-) 948 WP_274793618.1 SpoIVB peptidase S55 domain-containing protein -
  OU989_RS13820 (OU989_13835) recN 2736458..2738149 (-) 1692 WP_274793619.1 DNA repair protein RecN Machinery gene
  OU989_RS13825 (OU989_13840) ahrC 2738183..2738632 (-) 450 WP_004231170.1 transcriptional regulator AhrC/ArgR -
  OU989_RS13830 (OU989_13845) - 2738733..2739551 (-) 819 WP_274793620.1 TlyA family RNA methyltransferase -
  OU989_RS13835 (OU989_13850) dxs 2739551..2741452 (-) 1902 WP_274793621.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OU989_RS13840 (OU989_13855) - 2741618..2742499 (-) 882 WP_274793622.1 polyprenyl synthetase family protein -
  OU989_RS13845 (OU989_13860) xseB 2742503..2742736 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63398.07 Da        Isoelectric Point: 4.6215

>NTDB_id=762780 OU989_RS13820 WP_274793619.1 2736458..2738149(-) (recN) [Lysinibacillus irui strain IRB4-01]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSLAHPVLKK
LEEAGIEIEEDSIILRRDLNDSGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KTYSEQYEEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELEEANLKLGEEDDLLDERRRLMNFNKIFERSSAAYDAIQG
DSKGLDWIGNAMGALEDAATVDDQFKEASEAVTSAFYALQDAAYQVKNVLDDLEFDPARLNEVEQRLALFQNLKRKYGST
LEEILAYYEKIKTELNELLNRDEILQVKERRVLEMESVLNELAEKLSAVRKTAAHQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=762780 OU989_RS13820 WP_274793619.1 2736458..2738149(-) (recN) [Lysinibacillus irui strain IRB4-01]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATCTGACAGTAAGCTTTTCAGAAGGTTTAACAGTACT
TACAGGGGAAACAGGTGCTGGGAAATCCATCATCATTGATGCTGTGCATTTACTTGCGGGTGGACGAGGCAATACTGAAT
TTATTCGCCACGGTGCAAGAAAAGCAGAATTAGGTGGCTTATTTCAAATTTCAAGTTTAGCTCATCCTGTTCTGAAAAAA
TTAGAAGAAGCAGGCATAGAAATTGAAGAAGATAGCATTATTTTACGACGGGATTTAAATGATTCTGGTAAAAGCATTTG
CCGAGTAAATGGAAAGCTTGTGCCATTATCGGTACTTAGAGACATTGGCGCTAGCCTTATTGATATTCATGGTCAACATG
AAAATCAAGAGCTGATGGATGAAAAGCAGCATATTAATTTACTCGACCAGTTTGCGGAGGAAGAACTGTCCCCTATACAA
AAAACATATAGTGAACAATATGAAGAATATCGTTTACTAAAAAAAGATTTAGCTTCCATATCGATTGATGAACAATTGAT
GGCACAACGTATTGATTTGTACCAATTTCAAATAAAAGAGCTAGAGGAAGCCAATCTAAAGTTGGGTGAGGAAGACGACC
TTTTAGATGAACGCCGTCGTTTGATGAATTTTAATAAAATTTTTGAACGTTCTAGTGCAGCCTATGATGCCATTCAAGGC
GATTCGAAGGGACTTGATTGGATTGGTAATGCTATGGGTGCTTTAGAAGACGCCGCGACGGTTGACGATCAATTCAAAGA
AGCATCTGAAGCTGTGACATCTGCATTTTATGCCTTACAAGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGACTTAG
AGTTCGATCCAGCACGTTTAAACGAGGTTGAGCAGCGTTTAGCACTATTCCAAAATTTAAAACGCAAATATGGTTCGACA
CTGGAAGAAATCTTAGCGTATTATGAGAAAATTAAAACAGAATTAAATGAATTGTTGAATCGAGATGAAATTTTGCAGGT
CAAAGAACGCCGAGTGCTAGAGATGGAATCGGTACTTAATGAACTTGCTGAAAAACTTTCGGCGGTACGTAAAACTGCTG
CCCATCAATTGAGTGAAGCCATAATGGCAGAATTACGTGAACTACATATGGAAAAAGCAAAATTTATTGTTAATTTCGAT
GAATTACCATATTTCGATGCCAATGGAAAAGATCAAATCATTTTCTACATCTCCACAAACGTTGGAGAACCACCAAAATC
GTTACCCAAAATTGCATCTGGCGGTGAATTATCGCGAATGATGCTTGCATTGAAAACGATTTTCTCTTCCTCAAATGGTA
TCACCTCCATTATTTTTGATGAGGTCGATACAGGTGTAAGTGGTCGTGTAGCGCAAGCCATTGCAGAAAAAATCGCAGCG
ATTTCCGTTAATTCTCAAGTATTATGTATTTCTCATTTACCACAGGTTGCGGCTATGGCTGATCATCATTACTTTATCAA
AAAAGAGGTGGAGCATGATCGAACGTTCACTTCGTTATCGGAAATTGATCAAGATGCTCGAATTGAGGAAGTTAGCCGTA
TGATGTCTGGTACAGAAATTACAGCTTTAACATTACAGCATGCAACAGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.513

100

0.538