Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OHP008_RS03390 Genome accession   NZ_AP024965
Coordinates   708840..710360 (+) Length   506 a.a.
NCBI ID   WP_223888686.1    Uniprot ID   -
Organism   Helicobacter pylori strain #8     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 703840..715360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP008_RS03360 (OHP008_06760) moaC 703988..704464 (+) 477 WP_001916423.1 cyclic pyranopterin monophosphate synthase MoaC -
  OHP008_RS03365 (OHP008_06770) hpaA 704583..705365 (+) 783 WP_223888682.1 flagellar sheath lipoprotein HpaA -
  OHP008_RS03370 (OHP008_06780) - 705394..706230 (+) 837 WP_223888683.1 outer membrane protein -
  OHP008_RS03375 (OHP008_06790) tig 706342..707697 (+) 1356 WP_223888684.1 trigger factor -
  OHP008_RS03380 (OHP008_06800) clpP 707718..708305 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  OHP008_RS03385 (OHP008_06810) def 708310..708834 (+) 525 WP_223888685.1 peptide deformylase -
  OHP008_RS03390 (OHP008_06820) comM 708840..710360 (+) 1521 WP_223888686.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OHP008_RS03395 (OHP008_06830) - 710385..712445 (+) 2061 WP_223888687.1 heavy metal translocating P-type ATPase -
  OHP008_RS03400 (OHP008_06840) - 712481..713797 (+) 1317 WP_223888688.1 restriction endonuclease subunit S -
  OHP008_RS08120 (OHP008_06850) - 713969..714097 (+) 129 WP_263421619.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57265.27 Da        Isoelectric Point: 8.3918

>NTDB_id=76271 OHP008_RS03390 WP_223888686.1 708840..710360(+) (comM) [Helicobacter pylori strain #8]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPRANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSTYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSINKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=76271 OHP008_RS03390 WP_223888686.1 708840..710360(+) (comM) [Helicobacter pylori strain #8]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCGGAAATCGTGGCCGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAATTCTATCCAAGAAGCCAAACAGCGAGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCGTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAGGGCTAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTACCTCCATTGAGCCTGAACGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CACCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGGTTTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCACAACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAGTTAGTATTATTAGCCTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTTTCCATGCGCTCTATTAATAAGGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCACTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

98.024

100

0.98
  comM Acinetobacter baylyi ADP1

36.008

100

0.364