Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OU800_RS21330 Genome accession   NZ_CP113519
Coordinates   4814668..4815966 (-) Length   432 a.a.
NCBI ID   WP_268179343.1    Uniprot ID   -
Organism   Pseudomonas sp. GOM7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4809668..4820966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU800_RS21300 (OU800_21300) - 4809950..4810321 (-) 372 WP_268179337.1 DUF423 domain-containing protein -
  OU800_RS21305 (OU800_21305) mtgA 4810491..4811219 (+) 729 WP_268179338.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  OU800_RS21310 (OU800_21310) - 4811319..4811930 (-) 612 WP_268179339.1 hypothetical protein -
  OU800_RS21315 (OU800_21315) rpoH 4811990..4812844 (-) 855 WP_268179340.1 RNA polymerase sigma factor RpoH -
  OU800_RS21320 (OU800_21320) ftsX 4812987..4814003 (-) 1017 WP_268179341.1 permease-like cell division protein FtsX -
  OU800_RS21325 (OU800_21325) ftsE 4814003..4814671 (-) 669 WP_268179342.1 cell division ATP-binding protein FtsE -
  OU800_RS21330 (OU800_21330) pilA 4814668..4815966 (-) 1299 WP_268179343.1 signal recognition particle-docking protein FtsY Machinery gene
  OU800_RS21335 (OU800_21335) - 4816108..4817475 (+) 1368 WP_268179344.1 pitrilysin family protein -
  OU800_RS21340 (OU800_21340) - 4817472..4818932 (+) 1461 WP_268179345.1 pitrilysin family protein -
  OU800_RS21345 (OU800_21345) rsmD 4818932..4819534 (+) 603 WP_268179346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OU800_RS21350 (OU800_21350) - 4819679..4820674 (+) 996 WP_268179347.1 hydrolase -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 45713.27 Da        Isoelectric Point: 4.8830

>NTDB_id=762693 OU800_RS21330 WP_268179343.1 4814668..4815966(-) (pilA) [Pseudomonas sp. GOM7]
MFGSKDDKKSPAEAGAQNPPVTEEKKSLFSWWRKKPADSTTEPAPAEQPESALAPAEPATPEPVSESVPAAEPEAAETTP
APQPAPSVVEAAPVVAEVPLAAPEPMVEAIPPAPVAVPATQEKPSFFARLKQGLSKTSASLGEGMASLFLGKKSIDDDLL
DDLETRLLTADVGVEATTAIIGNLTKRVARKELADSGALYKALQEELVTLLKPVEQPLVIDSAKQPYVILVVGVNGVGKT
TTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDAVQAAKSRGVDVLIADTAGRL
HTKDNLMEELRKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNQTVNLSGLALTKLDGTAKGGVIFALAKQFGLP
IRYIGVGEGIDDLRPFQAQAFVQALFEERERA

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=762693 OU800_RS21330 WP_268179343.1 4814668..4815966(-) (pilA) [Pseudomonas sp. GOM7]
ATGTTTGGTTCCAAAGACGACAAGAAGTCGCCGGCCGAGGCTGGCGCGCAGAATCCGCCTGTGACCGAAGAAAAGAAATC
CCTGTTCAGTTGGTGGCGCAAGAAACCGGCGGACAGCACCACCGAGCCAGCACCAGCCGAGCAGCCTGAGTCCGCTCTGG
CACCTGCCGAGCCGGCGACGCCGGAGCCGGTTTCCGAGAGCGTGCCGGCAGCCGAGCCGGAAGCCGCCGAAACCACGCCA
GCGCCGCAGCCAGCGCCAAGCGTTGTCGAGGCCGCGCCTGTGGTCGCTGAGGTGCCGCTAGCGGCCCCCGAACCCATGGT
CGAGGCCATCCCGCCTGCTCCTGTCGCCGTGCCTGCCACGCAGGAAAAGCCGAGCTTCTTCGCCCGCCTCAAGCAAGGCC
TGTCCAAGACCAGCGCCAGCCTCGGCGAGGGCATGGCCAGCCTGTTCCTCGGCAAGAAGAGCATCGACGACGACCTGCTC
GACGATCTGGAAACCCGTCTGCTCACCGCTGACGTCGGTGTCGAGGCGACCACCGCCATCATCGGCAACCTGACCAAGCG
CGTGGCGCGCAAGGAACTGGCCGACAGCGGCGCGCTGTACAAGGCGTTGCAGGAAGAGCTGGTGACCCTGCTCAAGCCGG
TGGAACAGCCACTGGTGATCGACAGCGCCAAGCAGCCCTATGTGATCCTCGTCGTCGGGGTCAACGGCGTGGGCAAGACC
ACCACCATCGGCAAGCTGGCCAAGAAGCTGCAGCTCGAAGGCAAGAAGGTCATGCTCGCCGCTGGCGACACCTTCCGCGC
CGCTGCCGTGGAGCAATTGCAGGTCTGGGGCGAGCGCAACAACATCGCGGTGATCGCTCAGCACACCGGCGCCGACTCGG
CCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGTCCCGTGGCGTCGACGTGCTGATCGCCGACACCGCCGGGCGCCTG
CACACCAAGGACAACCTGATGGAAGAGCTGAGGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAAACGGCGCCGCACGA
AGTGCTGCTGGTGCTCGACGCCGGTACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCAGACGGTGAACCTCA
GCGGCCTGGCGCTGACCAAGCTCGATGGCACCGCCAAGGGCGGCGTCATCTTCGCCCTGGCCAAGCAGTTCGGCTTGCCG
ATTCGCTACATCGGCGTGGGCGAGGGCATCGATGACCTGCGCCCGTTCCAGGCGCAGGCCTTCGTTCAGGCACTCTTCGA
GGAGCGCGAGCGGGCATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(141-207)

SRP54-type protein, GTPase domain (SRP54)

(227-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.289

97.685

0.481