Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OU800_RS18845 Genome accession   NZ_CP113519
Coordinates   4258889..4259377 (+) Length   162 a.a.
NCBI ID   WP_330221394.1    Uniprot ID   -
Organism   Pseudomonas sp. GOM7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4253889..4264377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU800_RS18820 (OU800_18820) pgeF 4254483..4255214 (+) 732 WP_268178870.1 peptidoglycan editing factor PgeF -
  OU800_RS18825 (OU800_18825) - 4255367..4256476 (+) 1110 WP_268178871.1 NADH:flavin oxidoreductase -
  OU800_RS18830 (OU800_18830) thiO 4256527..4257624 (-) 1098 WP_268178872.1 glycine oxidase ThiO -
  OU800_RS18835 (OU800_18835) - 4257722..4258234 (+) 513 WP_268178873.1 GspH/FimT family pseudopilin -
  OU800_RS18840 (OU800_18840) - 4258396..4258869 (+) 474 WP_268178874.1 GspH/FimT family pseudopilin -
  OU800_RS18845 (OU800_18845) pilV 4258889..4259377 (+) 489 WP_330221394.1 type IV pilus modification protein PilV Machinery gene
  OU800_RS18850 (OU800_18850) - 4259387..4260250 (+) 864 WP_268178877.1 PilW family protein -
  OU800_RS18855 (OU800_18855) - 4260247..4260765 (+) 519 WP_268178878.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17437.88 Da        Isoelectric Point: 4.4492

>NTDB_id=762690 OU800_RS18845 WP_330221394.1 4258889..4259377(+) (pilV) [Pseudomonas sp. GOM7]
MIEVLVTLLLISVGVLGMVALQTRTIQYTQDSAQRNVAIMLANDLVEMMRAMPGSSDFYKDAVKDFPDKPDTCTPLPSNA
SGQLGCWADKVAKTLPVGALSEEGESLLESDFHICRTSVAGTCDNSGSTVEIQIAWHAKSGECINADGTSSAVCYYRLRT
QI

Nucleotide


Download         Length: 489 bp        

>NTDB_id=762690 OU800_RS18845 WP_330221394.1 4258889..4259377(+) (pilV) [Pseudomonas sp. GOM7]
ATGATCGAGGTTCTGGTGACGCTGCTGCTCATCAGTGTCGGCGTTCTCGGTATGGTCGCCCTGCAAACACGCACCATCCA
GTACACGCAGGACTCGGCTCAACGTAACGTCGCCATCATGCTCGCCAATGATCTGGTTGAAATGATGCGAGCGATGCCAG
GGTCCTCTGACTTCTACAAGGACGCAGTAAAGGACTTCCCCGATAAACCCGACACTTGCACACCGCTGCCCAGTAACGCT
TCCGGACAACTCGGCTGCTGGGCAGACAAGGTTGCCAAGACGCTTCCGGTGGGGGCACTCAGCGAAGAAGGTGAGAGTTT
GCTGGAAAGCGACTTTCACATCTGCCGCACGAGCGTGGCCGGCACCTGCGATAACAGTGGCAGTACCGTTGAAATCCAGA
TCGCCTGGCACGCCAAATCAGGCGAGTGCATAAACGCCGATGGTACAAGCTCGGCGGTCTGCTACTACCGCCTGCGGACT
CAGATATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

48.276

100

0.519