Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OU809_RS11890 Genome accession   NZ_CP113516
Coordinates   2381527..2382123 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus paralicheniformis strain 285-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2376527..2387123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS11850 (OU809_11850) - 2377557..2378063 (-) 507 WP_020451914.1 PTS glucose transporter subunit IIA -
  OU809_RS11855 (OU809_11855) - 2378236..2378655 (+) 420 WP_023857414.1 Hsp20 family protein -
  OU809_RS11860 (OU809_11860) - 2378674..2379120 (-) 447 WP_020451916.1 YppG family protein -
  OU809_RS11865 (OU809_11865) - 2379299..2379499 (+) 201 WP_011198064.1 YppF family protein -
  OU809_RS11870 (OU809_11870) - 2379523..2379894 (-) 372 WP_268050534.1 YppE family protein -
  OU809_RS11875 (OU809_11875) - 2379952..2380179 (-) 228 WP_075213145.1 YppD family protein -
  OU809_RS11880 (OU809_11880) sspM 2380379..2380483 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  OU809_RS11885 (OU809_11885) - 2380515..2381474 (-) 960 WP_023857417.1 DUF2515 domain-containing protein -
  OU809_RS11890 (OU809_11890) recU 2381527..2382123 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  OU809_RS11895 (OU809_11895) - 2382181..2384850 (+) 2670 WP_075213146.1 PBP1A family penicillin-binding protein -
  OU809_RS11900 (OU809_11900) - 2384871..2385374 (-) 504 WP_075213147.1 YpoC family protein -
  OU809_RS11905 (OU809_11905) nth 2385371..2386033 (-) 663 WP_023857420.1 endonuclease III -
  OU809_RS11910 (OU809_11910) - 2386050..2386748 (-) 699 WP_023857421.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=762605 OU809_RS11890 WP_003182896.1 2381527..2382123(+) (recU) [Bacillus paralicheniformis strain 285-3]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=762605 OU809_RS11890 WP_003182896.1 2381527..2382123(+) (recU) [Bacillus paralicheniformis strain 285-3]
GTGATTCGTTACCCGAACGGCAAATCGTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACTCCTGTACAGATTGTTCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTGATCAAGGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACGAAGAGCCGGACCTC
TTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCTATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833