Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OU809_RS06550 Genome accession   NZ_CP113516
Coordinates   1322144..1323973 (+) Length   609 a.a.
NCBI ID   WP_326498107.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 285-3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1317144..1328973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS06535 (OU809_06535) - 1318326..1319045 (-) 720 WP_020450941.1 response regulator -
  OU809_RS06540 (OU809_06540) - 1319068..1320612 (-) 1545 WP_003180641.1 sensor histidine kinase -
  OU809_RS06545 (OU809_06545) - 1320783..1321931 (+) 1149 WP_003180643.1 competence protein CoiA family protein -
  OU809_RS06550 (OU809_06550) pepF 1322144..1323973 (+) 1830 WP_326498107.1 oligoendopeptidase F Regulator
  OU809_RS06555 (OU809_06555) - 1324031..1324198 (-) 168 WP_003180648.1 hypothetical protein -
  OU809_RS06560 (OU809_06560) spxH 1324610..1325512 (-) 903 WP_003180650.1 protease adaptor protein SpxH -
  OU809_RS06565 (OU809_06565) - 1325509..1325907 (-) 399 WP_003180652.1 thiol management oxidoreductase -
  OU809_RS06570 (OU809_06570) - 1326392..1327045 (-) 654 WP_096748004.1 lytic transglycosylase domain-containing protein -
  OU809_RS06575 (OU809_06575) - 1327058..1327630 (-) 573 WP_096748005.1 CYTH domain-containing protein -
  OU809_RS06580 (OU809_06580) - 1327761..1328126 (+) 366 WP_003180659.1 hypothetical protein -
  OU809_RS06585 (OU809_06585) - 1328158..1328793 (+) 636 WP_003180661.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70432.02 Da        Isoelectric Point: 4.8544

>NTDB_id=762593 OU809_RS06550 WP_326498107.1 1322144..1323973(+) (pepF) [Bacillus paralicheniformis strain 285-3]
MAEEKKSKKLPSREEVKQEDTWRLEDIFPSDDAWSEEFQAVKELLPKLSEFKGRLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKAANLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGILAEASDVLSSSSNTFSMLNNADMEFPEITDENGEKVQLTHGNYVTFLESENRDVRRAAFKAVYETYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYEQAKDYMLKGLTPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYLLNTIDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHIKAQ
EGEPLTPELLTSIYYDLNKKYFGDNIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKSAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTTSEPIEAACKKFEEQLNEMEELLQKVNHS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=762593 OU809_RS06550 WP_326498107.1 1322144..1323973(+) (pepF) [Bacillus paralicheniformis strain 285-3]
GTGGCTGAAGAAAAAAAATCGAAGAAACTGCCTTCAAGAGAAGAGGTGAAGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTCCCGTCAGATGATGCTTGGAGCGAGGAATTTCAAGCCGTTAAAGAACTGCTGCCCAAGCTTTCCGAATTCAAGGGCA
GGCTCGGCCATTCCGCCGATGATCTATATGAAGCGCTGACTTATCAGGATAAGGTGATGGAGCGTCTCGGGAAGCTGTAT
ACTTACGCTCACATGCGCTATGATCAGGATACTGGAAATTCTTTTTACCAAGGTCTCAATGATAAAGCGGCCAACCTCTA
TACCCAGGCAGCGAGCGCAACGGCCTACATGGTGCCGGAAATACTATCGATTCAGGAAGAAAAGCTTCAGCAGTTCCTGC
TGGAAAAAGAGGAGTTAAAGCTTTACTCGCATGCTCTCGAAGAAATCAATAAAGAGCGTCCTCACGTACTGAGCGAGGAG
GAGGAAGGAATTTTGGCCGAAGCGTCTGATGTTCTTTCATCTTCTTCCAACACGTTCAGCATGCTGAATAACGCCGATAT
GGAATTTCCGGAGATCACCGATGAAAATGGAGAAAAGGTACAGCTCACACACGGCAATTATGTCACCTTTTTGGAAAGCG
AGAACCGCGATGTCCGCCGCGCGGCATTCAAGGCGGTTTACGAAACATACGGCCGCTTTAAAAACACGCTCGCTTCCACG
CTCAGCGGAGCTGTGAAAAAAGACAACTTTTATGCGAAGGTTAAACATTATAAATCGGCGCGGGAAGCTGCTTTGTCGCG
AAACAGCATTCCTGAAGAAGTCTATGACAATCTTGTCAGCACGATCAACAAGCATCTCCCGCTTCTTCACCGCTATGTTG
AACTTAGAAAAAAAGTGCTTGAGCTTGATGAAGTACACATGTATGACCTGTATACTCCGCTGGTAAAGGACTCTGGAATG
AAAGTTACCTACGAGCAGGCCAAGGACTATATGCTAAAAGGTTTGACGCCTTTAGGGGAAGAATATTCATCCATCCTGAA
AGAAGGCTTGAACAACCGCTGGGTCGATGTGTATGAAAACAAAGGAAAACGCAGCGGCGCTTATTCTTCAGGAACTTACG
GAACAAATCCGTATATTTTGATGAACTGGCAGGACAACGTCAATAATTTGTTTACGCTCGTCCATGAATTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCTTACCCGTACGGAAACTACAGCATTTTCGTAGCCGAAGTAGCTTCTAC
GACGAATGAAGCACTTTTGGGAGAATACTTGCTGAATACAATCGACGATGAAAAACAGCGGCTCTACATTTTGAATCATA
TGCTTGAAGGCTTCAAAGGAACGGTTTTCAGACAGACGATGTTTGCCGAATTTGAACATGAGATCCATATCAAAGCCCAG
GAAGGGGAACCGCTGACACCTGAGCTGTTAACGAGCATCTACTATGATTTGAATAAGAAATATTTCGGTGACAATATTGA
GATTGATAAGGAAATCGGTCTTGAGTGGTCAAGAATACCGCATTTCTATTACAATTATTATGTGTATCAGTATGCGACAG
GCTTCAGTGCAGCCCAGGCACTCAGTCAGCAGATTTTAAAAGAAGGCAAATCGGCTGTTGACCGCTATATTGAGTTCTTG
AAAGCGGGTAGCTCGGATTATCCGATTGAAGTGCTGAAAAAAGCCGGTGTTGATATGACAACCTCGGAGCCGATCGAAGC
TGCGTGCAAAAAGTTTGAAGAGCAGCTGAACGAAATGGAAGAACTTTTGCAAAAAGTCAATCATTCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-589)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.419

98.03

0.494