Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   OU809_RS05840 Genome accession   NZ_CP113516
Coordinates   1167836..1168414 (+) Length   192 a.a.
NCBI ID   WP_081303456.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 285-3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1162836..1173414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS21710 - 1163334..1163840 (-) 507 WP_370510583.1 methyl-accepting chemotaxis protein -
  OU809_RS21715 - 1164093..1164626 (-) 534 Protein_1096 protoglobin family protein -
  OU809_RS05825 (OU809_05825) - 1164733..1166283 (-) 1551 WP_050821016.1 FAD-dependent oxidoreductase -
  OU809_RS05830 (OU809_05830) - 1166404..1167261 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  OU809_RS05835 (OU809_05835) - 1167330..1167563 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  OU809_RS05840 (OU809_05840) comK 1167836..1168414 (+) 579 WP_081303456.1 competence protein ComK Regulator
  OU809_RS05845 (OU809_05845) - 1168408..1168773 (-) 366 WP_105980857.1 hypothetical protein -
  OU809_RS05850 (OU809_05850) - 1168981..1169592 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  OU809_RS05855 (OU809_05855) lepB 1169605..1170123 (+) 519 WP_020450832.1 signal peptidase I -
  OU809_RS05860 (OU809_05860) - 1170252..1172027 (-) 1776 WP_065643340.1 S8 family peptidase -
  OU809_RS05865 (OU809_05865) - 1172606..1172833 (+) 228 WP_123032305.1 JAB domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22405.62 Da        Isoelectric Point: 8.2489

>NTDB_id=762584 OU809_RS05840 WP_081303456.1 1167836..1168414(+) (comK) [Bacillus paralicheniformis strain 285-3]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFLVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKRQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=762584 OU809_RS05840 WP_081303456.1 1167836..1168414(+) (comK) [Bacillus paralicheniformis strain 285-3]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCTCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAGACAGGAATTTATGCTCTATCCGAAGGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

69.149

97.917

0.677