Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OHP008_RS01485 Genome accession   NZ_AP024965
Coordinates   315436..315903 (-) Length   155 a.a.
NCBI ID   WP_172413355.1    Uniprot ID   -
Organism   Helicobacter pylori strain #8     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 310436..320903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP008_RS01470 (OHP008_02950) - 310827..311609 (-) 783 WP_223888495.1 glycosyltransferase family 2 protein -
  OHP008_RS01475 (OHP008_02960) tlpB 311640..313337 (-) 1698 WP_223888496.1 methyl-accepting chemotaxis protein TlpB -
  OHP008_RS01480 (OHP008_02970) - 313548..315233 (-) 1686 WP_317984063.1 5'-nucleotidase C-terminal domain-containing protein -
  OHP008_RS01485 (OHP008_02980) luxS 315436..315903 (-) 468 WP_172413355.1 S-ribosylhomocysteine lyase Regulator
  OHP008_RS01490 (OHP008_02990) - 315938..317080 (-) 1143 WP_223888498.1 cystathionine gamma-synthase -
  OHP008_RS01495 (OHP008_03000) - 317101..318018 (-) 918 WP_223888499.1 O-acetylserine-dependent cystathionine beta-synthase -
  OHP008_RS01500 (OHP008_03010) - 318133..318714 (+) 582 WP_223888500.1 hypothetical protein -
  OHP008_RS01505 (OHP008_03020) dnaK 318962..320824 (-) 1863 WP_000521029.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17661.21 Da        Isoelectric Point: 7.1165

>NTDB_id=76258 OHP008_RS01485 WP_172413355.1 315436..315903(-) (luxS) [Helicobacter pylori strain #8]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=76258 OHP008_RS01485 WP_172413355.1 315436..315903(-) (luxS) [Helicobacter pylori strain #8]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATTGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAACAACCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCACGCTAATTATGTTGTGGATTGGTCGCCT
ATGGGTTGTCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCTAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCCAAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381

Multiple sequence alignment