Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OVA33_RS13960 Genome accession   NZ_CP113515
Coordinates   2727150..2727758 (-) Length   202 a.a.
NCBI ID   WP_115940742.1    Uniprot ID   -
Organism   Bacillus sp. KICET-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2722150..2732758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVA33_RS13940 (OVA33_13945) - 2722376..2723074 (+) 699 WP_017418023.1 DnaD domain-containing protein -
  OVA33_RS13945 (OVA33_13950) nth 2723093..2723752 (+) 660 WP_007612187.1 endonuclease III -
  OVA33_RS13950 (OVA33_13955) - 2723749..2724240 (+) 492 WP_012117839.1 YpoC family protein -
  OVA33_RS13955 (OVA33_13960) - 2724319..2727096 (-) 2778 WP_128974094.1 PBP1A family penicillin-binding protein -
  OVA33_RS13960 (OVA33_13965) recU 2727150..2727758 (-) 609 WP_115940742.1 Holliday junction resolvase RecU Machinery gene
  OVA33_RS13965 (OVA33_13970) - 2727800..2728762 (+) 963 WP_014418234.1 DUF2515 domain-containing protein -
  OVA33_RS13970 (OVA33_13975) sspM 2728806..2728910 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  OVA33_RS13975 (OVA33_13980) - 2729116..2729361 (+) 246 WP_014418233.1 DUF5446 family protein -
  OVA33_RS13980 (OVA33_13985) - 2729407..2729775 (+) 369 WP_017418019.1 YppE family protein -
  OVA33_RS13985 (OVA33_13990) - 2729814..2729996 (-) 183 WP_003153532.1 YppF family protein -
  OVA33_RS13990 (OVA33_13995) - 2730183..2730650 (+) 468 WP_017418018.1 YppG family protein -
  OVA33_RS13995 (OVA33_14000) - 2730680..2731093 (-) 414 WP_017418017.1 hypothetical protein -
  OVA33_RS14000 (OVA33_14005) - 2731232..2731738 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.78 Da        Isoelectric Point: 9.5778

>NTDB_id=762545 OVA33_RS13960 WP_115940742.1 2727150..2727758(-) (recU) [Bacillus sp. KICET-1]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=762545 OVA33_RS13960 WP_115940742.1 2727150..2727758(-) (recU) [Bacillus sp. KICET-1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAGGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891