Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   OPT59_RS10105 Genome accession   NZ_CP125360
Coordinates   2035267..2037078 (-) Length   603 a.a.
NCBI ID   WP_065359168.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_120444     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2030267..2042078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT59_RS10085 (OPT59_10085) - 2030650..2031348 (-) 699 WP_148848318.1 LPXTG cell wall anchor domain-containing protein -
  OPT59_RS10090 (OPT59_10090) - 2031439..2033778 (-) 2340 WP_283151503.1 C39 family peptidase -
  OPT59_RS10095 (OPT59_10095) - 2033793..2034833 (-) 1041 WP_065359170.1 hypothetical protein -
  OPT59_RS10100 (OPT59_10100) - 2034845..2035192 (-) 348 WP_065359169.1 TrbC/VirB2 family protein -
  OPT59_RS10105 (OPT59_10105) clpC 2035267..2037078 (-) 1812 WP_065359168.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  OPT59_RS10110 (OPT59_10110) - 2037065..2038813 (-) 1749 WP_065359167.1 DNA topoisomerase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67155.38 Da        Isoelectric Point: 5.5130

>NTDB_id=762539 OPT59_RS10105 WP_065359168.1 2035267..2037078(-) (clpC) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
MTVTRTPFLDRYTTNETQKIAKSAHFYPVYGRDKEIEALIVSLLRRSKNNPVLVGEAGVGKTAIVEGLCQAILKGNVPKE
LKSVNVRSLELASLMGQDEGFIPSFKAILQEAMATKGENLLFIDEFHTVVGTGGSERSALDAGNLLKPALARGDIQLIGA
TTLDEFHEYIETDRALERRMQPIMVEEPTQEEAIQILEAAKGDYERHHQLTITREAIRQAVTLSVRYIPSRFLPDKAFDI
IDEAGAMEARRGQSCVTETSVAIVFQETLGIPMTTLLKEERKSLLELEEKLKERVKGQEGAIEMVVDSLLIAQAGLQDLS
KPLGSFLFLGTTGVGKTELAKALAQALFGDEGAMIRFDMSEYAQEGDAKKWIGDAQKRTKGQLTEKVKNKPYAVVLFDEI
EKGAPEMYDLLLQVLDDGRLTDSSGRLVSFKHTVIIMTTNLGAPKIIKQTELKGPIDGLNERDAKQFLASMMGELQSDFR
PEFLNRIEGMVVFNLLDQAIIREIAQKNLDHLNQTLKARGFNLIYDDQLVDYLAELGTDIKNGARPLERFMKKHLLAPIA
KAILPLKQEGYDLLISIEGESPSPNHRFDKRTIKVLMNPKKDS

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=762539 OPT59_RS10105 WP_065359168.1 2035267..2037078(-) (clpC) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
ATGACCGTCACTAGAACCCCGTTTTTGGATCGGTACACGACCAATGAAACGCAAAAAATCGCTAAGTCAGCACACTTCTA
TCCCGTTTATGGTAGGGATAAGGAAATTGAAGCCCTTATTGTGTCACTTCTTAGACGAAGCAAGAATAATCCTGTTTTAG
TTGGCGAAGCTGGTGTTGGAAAAACAGCGATTGTTGAAGGGCTTTGTCAGGCAATTTTAAAAGGGAACGTGCCTAAAGAA
CTAAAGAGTGTCAATGTTCGTTCTCTTGAATTAGCTAGTTTGATGGGACAAGACGAAGGCTTTATCCCAAGCTTCAAAGC
GATTCTACAAGAAGCTATGGCGACCAAGGGGGAGAACCTCCTCTTCATCGATGAATTTCATACCGTAGTTGGAACAGGTG
GCTCAGAGCGCTCTGCCCTCGATGCAGGGAATCTCCTCAAACCTGCCCTTGCTAGAGGAGATATTCAACTAATTGGGGCA
ACAACACTCGATGAATTTCATGAGTACATTGAAACCGATCGGGCTTTGGAAAGACGGATGCAGCCTATTATGGTAGAAGA
ACCCACTCAAGAAGAAGCCATTCAGATTTTGGAAGCTGCTAAAGGGGATTATGAAAGGCATCATCAGCTGACGATTACGA
GGGAAGCCATTCGCCAAGCGGTAACGCTATCAGTTCGGTATATCCCAAGTCGCTTTTTACCCGACAAAGCTTTTGACATT
ATTGATGAAGCAGGAGCTATGGAAGCTAGGAGAGGGCAATCTTGTGTCACAGAAACAAGTGTTGCGATTGTTTTTCAAGA
AACCTTAGGGATTCCCATGACAACCCTCTTGAAAGAAGAGAGAAAAAGTCTTTTGGAGTTGGAGGAAAAACTAAAAGAGC
GTGTTAAAGGTCAAGAGGGGGCCATTGAAATGGTTGTTGACAGTCTCTTAATTGCTCAAGCAGGCTTGCAAGATTTAAGC
AAGCCCCTAGGTAGTTTTCTCTTTCTAGGGACAACAGGAGTCGGTAAGACAGAACTGGCTAAAGCATTAGCCCAAGCCCT
ATTTGGCGATGAGGGAGCTATGATTCGCTTTGATATGAGTGAATATGCTCAAGAAGGCGATGCGAAAAAGTGGATTGGCG
ATGCCCAAAAACGAACCAAAGGCCAGTTAACCGAGAAAGTCAAAAACAAGCCTTATGCTGTGGTCTTGTTTGATGAAATC
GAAAAAGGTGCACCAGAAATGTATGATTTATTGCTTCAGGTATTGGATGATGGTCGCTTAACCGATAGTAGTGGCCGACT
CGTTTCCTTTAAGCATACGGTGATTATCATGACAACCAACCTAGGCGCACCAAAAATCATCAAGCAGACCGAACTCAAAG
GACCAATTGATGGCTTGAACGAACGGGATGCGAAGCAGTTTTTGGCTAGCATGATGGGAGAATTGCAATCTGATTTTCGT
CCTGAATTTCTCAATCGGATTGAAGGGATGGTTGTCTTTAATTTACTTGATCAAGCTATTATTCGTGAAATTGCGCAGAA
AAATCTTGACCACTTAAACCAAACCTTGAAAGCAAGAGGCTTTAATCTCATTTACGATGACCAACTGGTTGACTACCTCG
CAGAACTTGGGACTGATATTAAAAATGGAGCAAGACCGCTTGAGCGATTTATGAAAAAGCACTTACTTGCCCCAATTGCC
AAAGCCATCTTACCCCTCAAACAAGAAGGCTATGATCTGCTTATTAGTATTGAGGGCGAGTCACCAAGCCCCAATCATCG
TTTCGATAAACGAACAATCAAGGTTCTTATGAACCCTAAAAAGGATTCTTAA

Domains

Predicted by InterProScan.

AAA lid domain (AAA_lid_9)

(189-254)

AAA domain (Cdc48 subfamily) (AAA_2)

(321-488)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(496-564)

ATPase family associated with various cellular activities (AAA) (AAA)

(52-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

41.498

100

0.441
  clpE Streptococcus mutans UA159

40.461

100

0.408
  clpC Streptococcus pneumoniae Rx1

39.58

100

0.406
  clpC Streptococcus pneumoniae D39

39.58

100

0.406
  clpC Streptococcus pneumoniae TIGR4

39.58

100

0.406
  clpC Streptococcus mutans UA159

39.706

100

0.403
  clpE Streptococcus pneumoniae Rx1

39.967

100

0.403
  clpE Streptococcus pneumoniae TIGR4

39.967

100

0.403
  clpE Streptococcus pneumoniae D39

39.967

100

0.403
  clpE Streptococcus pneumoniae R6

39.967

100

0.403
  clpC Streptococcus thermophilus LMD-9

41.126

97.181

0.4
  clpC Streptococcus thermophilus LMG 18311

41.126

97.181

0.4
  clpC Lactococcus lactis subsp. cremoris KW2

38.336

100

0.39