Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OVA33_RS02720 Genome accession   NZ_CP113515
Coordinates   542429..542866 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. KICET-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 537429..547866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVA33_RS02705 (OVA33_02710) - 540315..540677 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  OVA33_RS02710 (OVA33_02715) hxlA 540909..541544 (+) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  OVA33_RS02715 (OVA33_02720) hxlB 541541..542098 (+) 558 WP_025650327.1 6-phospho-3-hexuloisomerase -
  OVA33_RS02720 (OVA33_02725) nucA/comI 542429..542866 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OVA33_RS02725 (OVA33_02730) nin/comJ 542887..543285 (+) 399 WP_007609299.1 competence protein ComJ Regulator
  OVA33_RS02730 (OVA33_02735) - 543326..544762 (-) 1437 WP_104843069.1 family 1 glycosylhydrolase -
  OVA33_RS02735 (OVA33_02740) - 544866..545189 (-) 324 WP_007409357.1 YckD family protein -
  OVA33_RS02740 (OVA33_02745) - 545261..545695 (-) 435 WP_014416871.1 RDD family protein -
  OVA33_RS02745 (OVA33_02750) - 545710..546846 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=762497 OVA33_RS02720 WP_003156588.1 542429..542866(+) (nucA/comI) [Bacillus sp. KICET-1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=762497 OVA33_RS02720 WP_003156588.1 542429..542866(+) (nucA/comI) [Bacillus sp. KICET-1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641