Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OWC53_RS21125 Genome accession   NZ_CP113504
Coordinates   4609354..4610880 (+) Length   508 a.a.
NCBI ID   WP_268197909.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain 21PCA_AGRO2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4604354..4615880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OWC53_RS21105 (OWC53_21090) - 4605771..4606697 (-) 927 WP_014916970.1 branched-chain amino acid transaminase -
  OWC53_RS21110 (OWC53_21095) ilvM 4606723..4606983 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  OWC53_RS21115 (OWC53_21100) ilvG 4607061..4608707 (-) 1647 WP_039516435.1 acetolactate synthase 2 catalytic subunit -
  OWC53_RS21120 (OWC53_21105) ilvL 4608848..4608946 (-) 99 WP_071531109.1 ilv operon leader peptide -
  OWC53_RS21125 (OWC53_21110) comM 4609354..4610880 (+) 1527 WP_268197909.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OWC53_RS21130 (OWC53_21115) - 4610938..4611276 (-) 339 WP_268197910.1 DUF413 domain-containing protein -
  OWC53_RS21135 (OWC53_21120) hdfR 4611397..4612224 (+) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  OWC53_RS21140 (OWC53_21125) yjfF 4612246..4613208 (-) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  OWC53_RS21145 (OWC53_21130) ytfT 4613208..4614218 (-) 1011 WP_010283927.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  OWC53_RS21150 (OWC53_21135) ytfR 4614208..4615725 (-) 1518 WP_040034473.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55482.18 Da        Isoelectric Point: 6.6907

>NTDB_id=762474 OWC53_RS21125 WP_268197909.1 4609354..4610880(+) (comM) [Pectobacterium brasiliense strain 21PCA_AGRO2]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=762474 OWC53_RS21125 WP_268197909.1 4609354..4610880(+) (comM) [Pectobacterium brasiliense strain 21PCA_AGRO2]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCAGACGTTTATATCGAAGTTCATATCAGCAG
CGGGCTACCAGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTGGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAGATGACAACAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTGATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCACA
ACTTGCTATTGCTAGGGCCTCCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGTTGGCGAGCCAGACC
GTTCAGAGCGCCTCACCATAGTTCCTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTACCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTGCTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGCGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAGGAGGTAATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTCGCGCGCACGATCGCTGACCTAGGCGGTCGGGAT
AATATTGAAAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.032

99.606

0.638
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.458

100

0.636
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.214

100

0.469