Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   OPT59_RS00750 Genome accession   NZ_CP125360
Coordinates   122378..122623 (+) Length   81 a.a.
NCBI ID   WP_003058569.1    Uniprot ID   A0ABU0A7C2
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_120444     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117378..127623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT59_RS00725 (OPT59_00725) - 119285..119650 (+) 366 WP_003055257.1 DUF1033 family protein -
  OPT59_RS00730 (OPT59_00730) comGA/cglA 119731..120672 (+) 942 WP_015016543.1 competence type IV pilus ATPase ComGA Machinery gene
  OPT59_RS00735 (OPT59_00735) comGB 120608..121639 (+) 1032 WP_042357807.1 competence type IV pilus assembly protein ComGB Machinery gene
  OPT59_RS00740 (OPT59_00740) comGC 121641..121967 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  OPT59_RS00745 (OPT59_00745) comGD 121942..122370 (+) 429 WP_041788719.1 competence type IV pilus minor pilin ComGD Machinery gene
  OPT59_RS00750 (OPT59_00750) comGE 122378..122623 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  OPT59_RS00755 (OPT59_00755) comGF 122604..123044 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF Machinery gene
  OPT59_RS00760 (OPT59_00760) comGG 123022..123396 (+) 375 WP_012766449.1 competence type IV pilus minor pilin ComGG -
  OPT59_RS00765 (OPT59_00765) comGH 123459..124412 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  OPT59_RS00770 (OPT59_00770) - 124471..125667 (+) 1197 WP_003058485.1 acetate kinase -
  OPT59_RS00775 (OPT59_00775) - 125973..126179 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  OPT59_RS00780 (OPT59_00780) - 126282..126962 (+) 681 WP_003060329.1 type II CAAX endopeptidase family protein -
  OPT59_RS00785 (OPT59_00785) - 126980..127417 (+) 438 WP_012766452.1 hypothetical protein -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 9280.82 Da        Isoelectric Point: 9.6222

>NTDB_id=762462 OPT59_RS00750 WP_003058569.1 122378..122623(+) (comGE) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
MATGLLVAIVILVLTSLEQSQTRLTYYRSQQEKLNLALMAVQTGQASLNMNDYRLTVLRTEKTLIVRDQEGEVIRIEKKD
R

Nucleotide


Download         Length: 246 bp        

>NTDB_id=762462 OPT59_RS00750 WP_003058569.1 122378..122623(+) (comGE) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
ATGGCAACAGGACTCCTCGTAGCTATTGTCATACTGGTTCTAACAAGTTTGGAGCAAAGTCAGACAAGGTTGACATATTA
TCGCAGCCAACAAGAAAAGCTCAACCTAGCTCTGATGGCAGTACAAACTGGTCAAGCGTCTCTCAATATGAATGATTATC
GTCTGACGGTTTTACGCACAGAAAAAACACTTATCGTTAGGGATCAGGAAGGAGAAGTTATTAGAATTGAAAAAAAGGAC
AGGTAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(2-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

41.772

97.531

0.407
  comGE Streptococcus mutans UA159

41.772

97.531

0.407