Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OPT60_RS08150 Genome accession   NZ_CP125359
Coordinates   1652026..1652634 (+) Length   202 a.a.
NCBI ID   WP_003060942.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1647026..1657634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS08120 (OPT60_08120) - 1647292..1647774 (+) 483 WP_148862001.1 S-ribosylhomocysteine lyase -
  OPT60_RS08125 (OPT60_08125) - 1647888..1649369 (-) 1482 WP_015017303.1 cell division site-positioning protein MapZ family protein -
  OPT60_RS08130 (OPT60_08130) - 1649383..1650537 (-) 1155 WP_012767432.1 class I SAM-dependent RNA methyltransferase -
  OPT60_RS08140 (OPT60_08140) gpsB 1650982..1651308 (-) 327 WP_003060950.1 cell division regulator GpsB -
  OPT60_RS08145 (OPT60_08145) - 1651430..1651945 (-) 516 WP_003056762.1 DUF1273 domain-containing protein -
  OPT60_RS08150 (OPT60_08150) recU 1652026..1652634 (+) 609 WP_003060942.1 Holliday junction resolvase RecU Machinery gene
  OPT60_RS08155 (OPT60_08155) pbp1a 1652621..1654786 (+) 2166 WP_084916474.1 penicillin-binding protein PBP1A -
  OPT60_RS08160 (OPT60_08160) pepC 1654832..1656163 (-) 1332 WP_015017306.1 aminopeptidase C -
  OPT60_RS08165 (OPT60_08165) nadE 1656344..1657168 (-) 825 WP_042357972.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23336.95 Da        Isoelectric Point: 9.9487

>NTDB_id=762423 OPT60_RS08150 WP_003060942.1 1652026..1652634(+) (recU) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MVNYPHNLIRQKAPSVPKQSKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPIQIVKVDYPKRSRAKIIEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMAAVVEQNGICFVLLHFSTLKETYYLPARALIAFYQID
KGNKSMPLDYIRKHGFKIVIGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=762423 OPT60_RS08150 WP_003060942.1 1652026..1652634(+) (recU) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGGTCAACTACCCTCATAATCTTATTCGACAAAAAGCACCTTCCGTGCCAAAGCAATCAAAACAAAATAAGGTAGATTT
TGCCAATCGAGGCATGTCTTTTGAAGCGGCTATCAACGCGACAAATGATTATTATTTATCGCGGCAAATTGCTGTTATTC
ATAAAAAACCTACCCCCATCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGTGCGAAAATCATTGAAGCGTACTTT
AGACAAGCTTCAACGACAGATTATTCTGGGGTTTACAAGGGGCATTATATTGATTTTGAGGCCAAGGAAACCAGACAAAA
AACAGCCATGCCTATGAAAAATTTTCATCTCCATCAGATTGAGCACATGGCAGCTGTTGTGGAACAAAATGGAATTTGCT
TTGTCTTACTTCACTTTTCAACACTGAAAGAAACCTACTATCTGCCTGCTCGGGCTCTTATTGCTTTTTATCAGATTGAT
AAGGGGAACAAATCAATGCCCCTCGATTATATCAGAAAACATGGCTTTAAGATAGTTATTGGAGCCTTTCCACAAGTCCC
TTATCTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5