Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E5R32_RS11385 Genome accession   NZ_CP113493
Coordinates   2372831..2373460 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GTEN_97     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2367831..2378460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5R32_RS11365 ycbZ 2368221..2369981 (-) 1761 WP_000156479.1 AAA family ATPase -
  E5R32_RS11370 matP 2370167..2370619 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  E5R32_RS11375 ompA 2370694..2371746 (-) 1053 WP_000750418.1 porin OmpA -
  E5R32_RS11380 sulA 2372103..2372612 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  E5R32_RS11385 sxy/tfoX 2372831..2373460 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E5R32_RS11390 yccS 2373423..2375585 (-) 2163 WP_001550920.1 YccS family putative transporter -
  E5R32_RS11395 yccF 2375595..2376041 (-) 447 WP_001261235.1 YccF domain-containing protein -
  E5R32_RS11400 helD 2376164..2378218 (+) 2055 WP_001550921.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=762399 E5R32_RS11385 WP_000839153.1 2372831..2373460(+) (sxy/tfoX) [Escherichia coli strain GTEN_97]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=762399 E5R32_RS11385 WP_000839153.1 2372831..2373460(+) (sxy/tfoX) [Escherichia coli strain GTEN_97]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1