Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FG550_RS22635 Genome accession   NZ_CP113486
Coordinates   4739040..4739669 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GTEN_23     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4734040..4744669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FG550_RS22615 ycbZ 4734430..4736190 (-) 1761 WP_000156479.1 AAA family ATPase -
  FG550_RS22620 matP 4736376..4736828 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FG550_RS22625 ompA 4736903..4737955 (-) 1053 WP_000750418.1 porin OmpA -
  FG550_RS22630 sulA 4738312..4738821 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  FG550_RS22635 sxy/tfoX 4739040..4739669 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FG550_RS22640 yccS 4739632..4741794 (-) 2163 WP_001550920.1 YccS family putative transporter -
  FG550_RS22645 yccF 4741804..4742250 (-) 447 WP_001261235.1 YccF domain-containing protein -
  FG550_RS22650 helD 4742373..4744427 (+) 2055 WP_001550921.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=762394 FG550_RS22635 WP_000839153.1 4739040..4739669(+) (sxy/tfoX) [Escherichia coli strain GTEN_23]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=762394 FG550_RS22635 WP_000839153.1 4739040..4739669(+) (sxy/tfoX) [Escherichia coli strain GTEN_23]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1