Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   OPT60_RS03945 Genome accession   NZ_CP125359
Coordinates   759462..763091 (+) Length   1209 a.a.
NCBI ID   WP_180383561.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 754462..768091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS03935 (OPT60_03935) - 755137..756063 (-) 927 WP_003057448.1 neutral zinc metallopeptidase -
  OPT60_RS03940 (OPT60_03940) rexB 756238..759462 (+) 3225 WP_084916316.1 ATP-dependent nuclease subunit B Machinery gene
  OPT60_RS03945 (OPT60_03945) rexA 759462..763091 (+) 3630 WP_180383561.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  OPT60_RS03950 (OPT60_03950) - 763251..764366 (+) 1116 WP_003057424.1 aminotransferase -
  OPT60_RS03955 (OPT60_03955) - 764435..765247 (+) 813 WP_048327378.1 transporter substrate-binding domain-containing protein -
  OPT60_RS03960 (OPT60_03960) - 765348..766481 (+) 1134 WP_022554244.1 ISAs1-like element IS1548 family transposase -
  OPT60_RS03965 (OPT60_03965) rpsU 766663..766839 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  OPT60_RS03970 (OPT60_03970) mscL 766971..767345 (-) 375 WP_003059118.1 large conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 1209 a.a.        Molecular weight: 138288.71 Da        Isoelectric Point: 5.3455

>NTDB_id=762390 OPT60_RS03945 WP_180383561.1 759462..763091(+) (rexA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MSFDPFLSPSAIAQLQEKETQSSQAQKRTPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFT
VKAATELRERIEKKLYAEIAKTSDSLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISPQFRIMQDKAEQDILK
RDVFSKLFEEFMTQDDPSLFKALVKNFSGNRKDASSFREVVYSCYAFSQSTENPKQWLEETFLKAAQTYQGLEDVPEQEI
QLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLAMIEKLYEWARDFPHLYGRQGLSRLAKDLTTLLPTGNDVT
VAGIKYPVFKSLHQKLIRFRHLETILSYQPESLPLLELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPDIR
QTYQDQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDYQTYPEQGKLILLKENFR
SQTEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSVGQKIASPEHRAKLLLYNTDHEDQLDIEDADGISPSEVTIVAKE
IIRLHNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSP
MFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFND
RFYFDFVGSQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASSKQAVNLMTIHKSKGLEF
KYVFLLNCDKRFAMTDIHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVA
MTRAEKQIYLIGKASKEKSQEFTDGKRSGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQ
SQQLLQPDDLKDNRQSADITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNAFTLP
EFSKQVKVEASQVGSALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALDLQKVEQFFTETALGKRFQTYSTNLYRE
APFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQTYGLPVTKKYLVLMG
GSELAIVTL

Nucleotide


Download         Length: 3630 bp        

>NTDB_id=762390 OPT60_RS03945 WP_180383561.1 759462..763091(+) (rexA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATATCATTTGACCCTTTTTTAAGTCCAAGTGCCATTGCGCAATTACAAGAAAAAGAAACTCAAAGTAGTCAAGCGCAAAA
AAGAACCCCAGAACAAATCGAAGCTATTTATACCAGTGGGCAAAATATCTTGGTGTCAGCCTCAGCTGGATCTGGAAAAA
CCTTTGTTATGGTGGAACGGATTCTTGATAAAATCCTAAGGGGTGTTTCAGTAGATAGACTTTTTATTTCAACCTTTACG
GTCAAAGCCGCTACGGAGTTACGTGAACGTATTGAAAAGAAACTGTATGCGGAAATTGCGAAAACCAGTGATTCGTTGCT
AAAAGCTTATCTAACAGACCAATTACAAGCTTTGTCACAAGCTGATATTGGGACGATGGATGCTTTTGCTCAAAAAGTCC
TCATCCGTTACGGGTACAGCATTGGTATTTCCCCTCAATTTCGTATTATGCAAGATAAGGCGGAGCAAGACATTCTAAAG
CGAGATGTTTTTAGCAAATTATTTGAAGAATTTATGACTCAAGATGATCCGTCCTTGTTCAAGGCATTGGTCAAAAATTT
TTCCGGTAATCGTAAAGATGCTTCTTCGTTTAGAGAAGTCGTCTATAGTTGCTACGCCTTTAGTCAATCTACCGAAAACC
CGAAACAGTGGTTAGAAGAAACCTTTCTAAAAGCTGCTCAAACCTATCAAGGGCTTGAAGATGTCCCTGAACAAGAGATT
CAACTCTTACTGTCGACCATGCAAGATACCGCAGATCAGTTAAGAGATGTGACTGACATGGAAGATTATGGTCAGCTGAC
AAAAGCTGGGAAACCAACAGCAAAATACGTCAAACATTTGGCCATGATCGAGAAGCTTTACGAATGGGCGCGTGACTTTC
CTCACCTCTATGGGAGACAGGGGCTAAGCCGCTTGGCAAAGGACCTGACAACTCTTTTGCCGACTGGAAATGATGTGACA
GTGGCTGGGATAAAATACCCTGTTTTCAAGAGTTTACACCAAAAGCTCATCCGATTTAGGCACTTAGAAACCATTTTAAG
CTATCAGCCAGAAAGCCTTCCCTTATTAGAACTTTTGAAGATTGTTGTGCTTGCTTTTTCGAAGGCTTATCTGGATGCCA
AAAAACAAGAAGGTGCTTTTGAATTTTCAGATATTGCCCATTTTGCCATACAGATTTTAGAAGAAAACCCTGATATTAGG
CAGACATATCAAGACCAGTATCATGAAGTCATGGTTGATGAGTATCAGGATAATAATCATATGCAAGAACGGCTGTTGAC
TTTATTATCAAATGGACATAACCGTTTTATGGTTGGTGATATTAAACAATCCATTTACCGTTTTCGACAGGCAGATCCTC
AGATTTTCAATCAAAAATTCAAGGACTATCAAACCTATCCTGAGCAAGGAAAACTCATTTTATTGAAAGAGAATTTCCGG
AGTCAAACAGAAGTTTTAGAAGCTAGCAATGCTGTCTTTACTCATTTAATGGATGAATCCCTAGGAGATATTTTGTATGA
TGAGCAGCATCAGTTGGTGGCAGGTAGCGTTGGTCAAAAAATTGCTTCCCCAGAGCATCGTGCTAAGCTCCTGCTTTATA
ACACCGATCACGAAGATCAACTTGACATAGAAGATGCGGATGGCATTTCGCCTAGTGAAGTGACCATCGTTGCTAAAGAA
ATCATTAGGTTACACAATGAGCAACACGTACCTTTTGAGGATATAACCCTCTTAGTATCATCTAGAACAAGAAATGATGC
CATTTTTCATACCTTTAACCAATACGGTATTCCGCTTGTGGCAGATGGTGGTCAGCAAAATTACCTTAAGTCAGTTGAAG
TAATGGTGATGTTGGATACTTTACGTACTATTAATAACCCAAGAAATGATTATGCCTTGGTCGCCCTATTGCGTTCACCG
ATGTTTGCTTTTGATGAAGATGAACTGACTAGGCTAGCCCTCCAACAAGGAGACGACAAAGAAGCAGATTGCCTCTACGA
TAAACTGGAGAGAGCATGCCTTGGCACAGGAACACACCCTGAGTTGGTCCATCAAGACCTAAAACTAAAACTAAGCAGGT
TTATAGAGACCTTAAAAAGCTGGCGCCGTTACGCTAAAATCAGGTCGCTCTATGATCTCATTTGGAAAATTTTCAACGAC
CGTTTCTATTTTGATTTTGTGGGTAGTCAAGCTAAAGCAGAACAGGCACAAGCTAATTTATATGCCTTAGCACTTCGAGC
TAATCAGTTTGAACAATCAGGTTACAAAGGTCTCTCGCGTTTTATTGGCATGATTGACAAGGTGTTGGAAACACAAAATG
ATTTAGCCGATGTTGAGGTAGCTAGCTCTAAACAAGCGGTTAATCTGATGACTATTCACAAGTCCAAGGGATTGGAATTC
AAGTATGTCTTTCTCCTCAACTGTGATAAGCGTTTTGCCATGACAGATATCCATGCGCCATTTATTTTAAGCCGTCAACA
GGGCATCGGTATTAAGTATCTAGCAGATGTCAAAGACGTTCTGGAAGAAAAAACGTTACCTTCAGTGAAAGTGAGTATGG
AAACTCTCCCCTATCAACTCAATAAACAAGAGCTGCGTTTGGCGACTCTGTCTGAGCAAATGCGCTTACTCTATGTTGCT
ATGACACGGGCTGAAAAGCAAATCTATCTGATAGGCAAGGCAAGCAAGGAGAAAAGTCAAGAATTCACCGATGGCAAACG
CTCGGGAAATCATTTGCCTTTAGCTCTGCGTGAGCGACTAATGTCCTTCCAAGATTGGCTTTTAGCGATAGCAGATACCT
TCACCGCAGAAGATCTCCATTTTGATGTTCAGTTTATTGAAGAAAGTGAATTGAGTCCAGAAGCTATTGGTCATCTACAG
AGTCAACAGCTCTTACAACCAGATGACCTCAAAGACAATCGTCAGTCAGCAGATATTACGAGAGCCATTGACATGCTTAA
TAAGGTATCTCAACTTAATGAACGCTATGAAGCTGCCATTCACCTACCAACAGTCCGAACGCCAAGCCAACTAAAAGCTG
CTTATGAGCCCCTGTTGGATTCAGATGGCGTCGAGGTCATGGAAAAAAGTTATCGGACACTCAATGCATTTACCTTACCT
GAATTTTCAAAGCAAGTTAAAGTTGAAGCTAGTCAGGTAGGGTCAGCCCTTCATCGACTCATGCAAGCCATCCCTTTAAC
GAAGCCAATCAGTTTGGCAACAATTGCCCAAGCGTTGGAAGAAATAGAAGCTGAAGCAGTGGTCAAAGCAGCCCTTGATT
TACAAAAGGTAGAACAGTTCTTTACTGAAACGGCTTTAGGAAAAAGGTTTCAAACCTACTCGACTAACCTTTACCGAGAA
GCTCCATTTGCCATCCTCAAGAAAGACCCTCTCAGCCAAGAAGATTATGTCATTCGTGGGATTATAGATGCCTTTCTCTT
GTTTGAAGATCATATCGAATTGATAGACTACAAAACAGATAGGTATCGTCATCCGAGTGACTTAAAAACACGCTATCAAC
AACAACTGGAATTATATGCAGAAGCGCTTAGCCAGACCTATGGACTTCCTGTAACCAAAAAGTACTTGGTGCTGATGGGC
GGATCAGAGTTGGCTATTGTGACGCTTTGA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1039-1188)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-891)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.326

71.712

0.368