Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDM87_RS06765 Genome accession   NZ_AP024964
Coordinates   1419765..1420232 (+) Length   155 a.a.
NCBI ID   WP_223892805.1    Uniprot ID   -
Organism   Helicobacter pylori strain #6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414765..1425232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS06745 (OHP006_13470) dnaK 1414957..1416819 (+) 1863 WP_000521037.1 molecular chaperone DnaK -
  LDM87_RS06750 - 1416965..1417541 (-) 577 Protein_1335 hypothetical protein -
  LDM87_RS06755 (OHP006_13490) - 1417649..1418566 (+) 918 WP_223892804.1 O-acetylserine-dependent cystathionine beta-synthase -
  LDM87_RS06760 (OHP006_13500) - 1418588..1419730 (+) 1143 WP_096481162.1 cystathionine gamma-synthase -
  LDM87_RS06765 (OHP006_13510) luxS 1419765..1420232 (+) 468 WP_223892805.1 S-ribosylhomocysteine lyase Regulator
  LDM87_RS06770 (OHP006_13530) - 1420370..1422115 (+) 1746 WP_223892806.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  LDM87_RS06775 (OHP006_13540) tlpB 1422321..1424018 (+) 1698 WP_223892807.1 methyl-accepting chemotaxis protein TlpB -
  LDM87_RS06780 (OHP006_13550) - 1424049..1424831 (+) 783 WP_223892808.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17663.22 Da        Isoelectric Point: 6.8405

>NTDB_id=76239 LDM87_RS06765 WP_223892805.1 1419765..1420232(+) (luxS) [Helicobacter pylori strain #6]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKDLVRAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=76239 LDM87_RS06765 WP_223892805.1 1419765..1420232(+) (luxS) [Helicobacter pylori strain #6]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGTCTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCATTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCTAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCCAAGGATTTAGTGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment