Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   OQH41_RS13655 Genome accession   NZ_CP113442
Coordinates   2883252..2885684 (-) Length   810 a.a.
NCBI ID   WP_005128106.1    Uniprot ID   A0A9E9PAA8
Organism   Acinetobacter baumannii strain C9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2878252..2890684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQH41_RS13630 (OQH41_13630) purM 2878575..2879645 (+) 1071 WP_000071984.1 phosphoribosylformylglycinamidine cyclo-ligase -
  OQH41_RS13635 (OQH41_13635) purN 2879642..2880271 (+) 630 WP_000975534.1 phosphoribosylglycinamide formyltransferase -
  OQH41_RS13640 (OQH41_13640) - 2880335..2881144 (-) 810 WP_000114072.1 alpha/beta fold hydrolase -
  OQH41_RS13645 (OQH41_13645) sppA 2881163..2882179 (-) 1017 WP_025469996.1 signal peptide peptidase SppA -
  OQH41_RS13650 (OQH41_13650) - 2882316..2883299 (+) 984 WP_265615333.1 lysophospholipid acyltransferase family protein -
  OQH41_RS13655 (OQH41_13655) comA/comEC 2883252..2885684 (-) 2433 WP_005128106.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OQH41_RS13660 (OQH41_13660) lolD 2885770..2886456 (-) 687 WP_000049406.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OQH41_RS13665 (OQH41_13665) - 2886449..2887684 (-) 1236 WP_001984636.1 lipoprotein-releasing ABC transporter permease subunit -
  OQH41_RS19385 - 2887822..2887902 (+) 81 Protein_2682 PilZ domain-containing protein -
  OQH41_RS13670 (OQH41_13670) - 2887932..2888840 (-) 909 WP_001140078.1 DMT family transporter -
  OQH41_RS13675 (OQH41_13675) - 2888851..2889336 (-) 486 WP_001985538.1 YaiI/YqxD family protein -
  OQH41_RS13680 (OQH41_13680) - 2889594..2890535 (+) 942 WP_000795874.1 hypothetical protein -

Sequence


Protein


Download         Length: 810 a.a.        Molecular weight: 92470.72 Da        Isoelectric Point: 8.6364

>NTDB_id=762346 OQH41_RS13655 WP_005128106.1 2883252..2885684(-) (comA/comEC) [Acinetobacter baumannii strain C9]
MFKIILLGWIGGIALMGIDFPLIMQYEKVGEALLLLAIIFYLYKRPMFVDRPFLKAVFCLLCTTSLFMVGYHYAEKALIE
RLEQRETDTRNLDIIVYINRLSEEKDNKVQQTAQVLNLSKEPVNWLLYLKSNNQNLLKNNQNLELGHYYRISGKTRPAHS
YATSGAFDQEKWFIQRNIMSGFNVRYIEPLSLDEIYRLGYQQHLKEQQSFSNSFRLNIEKLRLTFRQILNSSSIQQKGLI
LALLTGDESLLSDETQLQFKQLGISHLLAISGPHVLIFAIMLSWACHQFISRYYPQIYLWKPKQVLMTVPCCLGVLIYTA
FVGFEIPALRTLLSVFIFIGFLLLKQPIKPFTLLVYSASLLLLIDPFSVLSAGFWLSYGACFILLRIYQTIAQLPQQHFL
SLSSKMIFMSKVLIESQGKIFIALSPLTLLFFQQISWVAPLTNIIAVPIVGGVIVPLNIIAACAWFVVKPFGNMLFHFND
MLLSILLSCLGLLEKLSLPLQGISLTPLSLLAISFAIIILFLPKGILPKTWGILCCLPLVIMNKTSQQIQLNILDVGQGQ
AIFLQHSEQNWLIDTGGSYDEKIFSIGQNVVVPFLRQQGVRQLDHVVLSHLDQDHSGAFPLIQQEIPVKQLISNEQLPND
LKQPFQYCHQGQQWHYPELDIQILWPKEKDLAFVTSNQNQYSCVVYLQFKKVGGYQNFLIMGDAGWEAEYELLKDYPNLK
IDVLVLGHHGSKHSSAYDFLATLKPKLAIASAGFDNRYGHPSQEVIARLKALHIPLKSTVEQGTLNFVLENHKIVLHDRR
LDRLWLSRGF

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=762346 OQH41_RS13655 WP_005128106.1 2883252..2885684(-) (comA/comEC) [Acinetobacter baumannii strain C9]
ATGTTTAAGATTATTCTATTGGGGTGGATTGGCGGTATTGCATTGATGGGAATAGATTTCCCTTTAATCATGCAATATGA
AAAAGTGGGCGAGGCTCTACTGTTACTTGCCATTATTTTTTATCTTTATAAACGACCAATGTTCGTTGATCGACCATTTT
TAAAGGCAGTGTTTTGCTTATTATGTACAACAAGTCTTTTTATGGTTGGTTACCACTATGCTGAAAAAGCACTGATTGAA
CGATTAGAACAAAGAGAAACGGATACCCGAAATCTCGACATTATTGTCTATATAAACCGTTTAAGTGAAGAAAAAGATAA
TAAGGTTCAACAAACTGCACAAGTTCTAAATCTTTCTAAAGAACCGGTGAATTGGTTGCTATATTTAAAAAGTAATAATC
AAAATTTATTAAAGAATAATCAGAATCTTGAATTAGGTCACTATTATCGAATATCTGGAAAAACAAGACCTGCGCATAGT
TATGCCACCTCAGGAGCTTTTGATCAGGAAAAGTGGTTTATTCAGCGAAATATTATGTCTGGTTTTAACGTGAGATATAT
TGAGCCTTTAAGCCTTGATGAAATCTATCGATTGGGCTATCAGCAACATTTAAAAGAACAACAGTCTTTTTCCAATAGTT
TTCGTTTAAATATAGAAAAACTTCGCTTAACTTTTAGGCAAATATTAAACAGCTCATCTATACAGCAAAAGGGTTTAATT
TTAGCTTTGCTGACAGGTGATGAAAGCCTTTTATCAGATGAAACTCAACTACAGTTCAAACAATTAGGAATTAGTCATTT
ATTGGCGATCTCAGGCCCACATGTGCTCATTTTTGCCATTATGTTATCTTGGGCATGTCATCAATTTATCAGTCGTTATT
ATCCTCAAATTTACTTATGGAAACCGAAACAGGTTTTGATGACTGTACCATGCTGCCTTGGTGTTTTAATTTATACTGCA
TTTGTAGGTTTCGAAATTCCTGCACTACGAACATTATTATCAGTATTTATATTTATTGGATTTCTATTATTAAAACAACC
TATTAAACCTTTTACATTACTCGTATATAGCGCAAGTCTACTGTTGCTAATTGACCCGTTTAGTGTGCTTTCTGCAGGTT
TTTGGCTGTCTTATGGGGCATGTTTTATTTTATTAAGAATTTACCAAACTATAGCGCAGCTACCTCAGCAACATTTTTTA
AGTCTGAGCTCAAAAATGATTTTTATGAGTAAGGTGTTAATTGAATCTCAAGGCAAAATATTTATTGCATTGAGTCCCTT
AACCTTACTTTTCTTTCAACAAATTTCTTGGGTTGCTCCATTAACCAATATTATTGCTGTACCTATTGTTGGTGGTGTTA
TTGTCCCTTTAAACATCATAGCTGCTTGCGCATGGTTTGTAGTAAAACCATTTGGAAATATGCTTTTTCATTTCAATGAT
ATGTTGCTCAGCATATTGCTGAGTTGTTTGGGCTTATTAGAAAAACTCTCTTTACCATTACAAGGTATAAGCTTGACGCC
ACTGTCTTTATTAGCGATTAGTTTTGCCATAATTATTTTATTTTTACCTAAAGGAATTCTGCCCAAAACTTGGGGGATAT
TATGTTGTTTACCCTTAGTTATTATGAACAAAACGAGTCAGCAAATTCAGCTTAATATTTTAGATGTTGGACAGGGGCAA
GCCATTTTTTTACAACATTCCGAACAAAACTGGTTAATTGATACAGGCGGTTCTTACGATGAAAAAATATTTAGTATTGG
ACAAAATGTTGTAGTGCCTTTTCTACGTCAGCAAGGCGTAAGACAATTAGATCATGTTGTGCTATCCCATCTTGATCAAG
ACCATAGTGGCGCGTTTCCTCTTATTCAACAAGAGATTCCTGTAAAGCAGCTTATTTCGAATGAACAATTACCAAATGAT
TTAAAGCAACCATTCCAATATTGCCATCAAGGGCAACAATGGCATTATCCTGAGTTAGATATTCAAATTTTATGGCCTAA
AGAAAAAGATCTGGCTTTTGTTACTTCTAACCAGAATCAATATTCTTGTGTTGTATATCTTCAATTTAAAAAAGTTGGTG
GTTACCAAAATTTTCTTATTATGGGCGATGCAGGATGGGAAGCTGAATACGAGTTATTAAAAGATTATCCTAACTTGAAG
ATAGATGTGTTGGTGCTAGGACATCATGGAAGTAAGCACAGTTCGGCTTATGATTTCTTGGCGACCTTAAAACCTAAACT
GGCCATTGCATCGGCAGGTTTTGATAACCGTTATGGCCATCCTAGCCAAGAAGTTATAGCACGTTTAAAAGCTCTACATA
TTCCGCTAAAAAGTACTGTGGAACAAGGGACCTTAAATTTTGTATTGGAAAATCACAAAATAGTTTTACATGACCGACGT
TTGGATAGGCTCTGGTTGAGTAGAGGTTTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

97.778

100

0.978

  comA/comEC Acinetobacter baumannii strain A118

96.667

100

0.967

  comA/comEC Acinetobacter baylyi ADP1

50.308

100

0.504