Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   QL281_RS21695 Genome accession   NZ_CP125292
Coordinates   4078859..4079290 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM117797     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 4073859..4084290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS21675 (QL281_21675) spoVS 4074421..4074681 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  QL281_RS21680 (QL281_21680) tdh 4074946..4075989 (+) 1044 WP_033883737.1 L-threonine 3-dehydrogenase -
  QL281_RS21685 (QL281_21685) kbl 4076002..4077180 (+) 1179 WP_041336018.1 glycine C-acetyltransferase -
  QL281_RS21690 (QL281_21690) miaB 4077328..4078857 (+) 1530 WP_213385311.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QL281_RS21695 (QL281_21695) ymcA 4078859..4079290 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  QL281_RS21700 (QL281_21700) cotE 4079552..4080097 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  QL281_RS21705 (QL281_21705) hexA 4080230..4082806 (+) 2577 WP_041336021.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=762343 QL281_RS21695 WP_003231834.1 4078859..4079290(+) (ymcA) [Bacillus subtilis strain SRCM117797]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=762343 QL281_RS21695 WP_003231834.1 4078859..4079290(+) (ymcA) [Bacillus subtilis strain SRCM117797]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1