Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QL281_RS14960 Genome accession   NZ_CP125292
Coordinates   2788675..2789109 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM117797     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2783675..2794109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS14930 (QL281_14930) ydaD 2784324..2785184 (+) 861 WP_041336822.1 SDR family oxidoreductase -
  QL281_RS14935 (QL281_14935) lyxE 2785200..2785703 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  QL281_RS14940 (QL281_14940) ydaF 2785792..2786343 (+) 552 WP_283009899.1 GNAT family protein -
  QL281_RS14945 (QL281_14945) ydaG 2786421..2786840 (+) 420 WP_041351798.1 pyridoxamine 5'-phosphate oxidase family protein -
  QL281_RS14950 (QL281_14950) amj 2787346..2788155 (+) 810 WP_041336819.1 lipid II flippase Amj -
  QL281_RS14955 (QL281_14955) ydzA 2788200..2788490 (-) 291 WP_041351796.1 DUF3817 domain-containing protein -
  QL281_RS14960 (QL281_14960) lrpC 2788675..2789109 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  QL281_RS14965 (QL281_14965) topB 2789174..2791357 (+) 2184 WP_041351795.1 DNA topoisomerase III -
  QL281_RS14970 (QL281_14970) - 2791560..2792648 (+) 1089 WP_041351794.1 hypothetical protein -
  QL281_RS14975 (QL281_14975) epsK 2792629..2793480 (+) 852 Protein_2912 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=762291 QL281_RS14960 WP_003246585.1 2788675..2789109(+) (lrpC) [Bacillus subtilis strain SRCM117797]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=762291 QL281_RS14960 WP_003246585.1 2788675..2789109(+) (lrpC) [Bacillus subtilis strain SRCM117797]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1