Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OQG81_RS04000 Genome accession   NZ_CP113440
Coordinates   719064..720866 (+) Length   600 a.a.
NCBI ID   WP_014294216.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain E37     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 714064..725866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQG81_RS03975 (OQG81_03975) queA 714723..715751 (-) 1029 WP_014294212.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  OQG81_RS03980 (OQG81_03980) - 715968..716426 (+) 459 WP_223246245.1 VIT1/CCC1 transporter family protein -
  OQG81_RS03985 (OQG81_03985) nagB 716554..717258 (+) 705 WP_014294213.1 glucosamine-6-phosphate deaminase -
  OQG81_RS03990 (OQG81_03990) - 717334..718050 (+) 717 WP_014294214.1 pseudouridine synthase -
  OQG81_RS03995 (OQG81_03995) - 718103..719074 (+) 972 WP_014294215.1 competence protein CoiA -
  OQG81_RS04000 (OQG81_04000) pepF 719064..720866 (+) 1803 WP_014294216.1 oligoendopeptidase F Regulator
  OQG81_RS04005 (OQG81_04005) - 720940..721458 (+) 519 Protein_726 GNAT family N-acetyltransferase -
  OQG81_RS04010 (OQG81_04010) - 721480..722091 (+) 612 WP_014294217.1 HAD-IA family hydrolase -
  OQG81_RS04015 (OQG81_04015) - 722145..722846 (+) 702 WP_014294218.1 O-methyltransferase -
  OQG81_RS04020 (OQG81_04020) - 722916..723947 (+) 1032 WP_014294219.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68920.02 Da        Isoelectric Point: 4.6248

>NTDB_id=762291 OQG81_RS04000 WP_014294216.1 719064..720866(+) (pepF) [Streptococcus macedonicus strain E37]
MSDNRSHIDEKYQWDLSTVFATDDAWEAELASLDGDLENAKAYKGRLTASSNDLLAITESYLALSRRLEKLYVYASMKND
QDTTVAKYQEYQAKATAIYAKFSEIFAFYEPELMQLSKEAFEDFVAETPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFELLDNADIIFPIVLDDKGKEIQLTHGNFITLLESKNRDVRKEAYQALYATYEQFQHTYAKTLQTNVKVH
NYEARVHHFKSAREAALSANFIPESVYDTLIETVNANLPLLHRYVELRKKILKLDDLKMYDIHTPLSEMDMSFTYEEALA
KAEDVLAVFGKEYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFILLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKSTIFRQAQFAEFEDIIHKADQAGEVLTSDY
LNQLYADLNEKYYGLSKADNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTKADIDRYLDYLKAGNSDYPL
NVIKKAGVDMTTSAYLDAAFRIFEERLDELEALIEKGAQL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=762291 OQG81_RS04000 WP_014294216.1 719064..720866(+) (pepF) [Streptococcus macedonicus strain E37]
ATGTCAGATAATCGTAGTCATATTGATGAAAAATACCAATGGGATTTAAGCACAGTTTTTGCCACAGATGATGCTTGGGA
AGCGGAGCTGGCTAGCCTTGATGGTGATTTAGAAAATGCTAAAGCTTACAAAGGGCGTTTGACAGCGTCAAGTAATGATT
TGCTTGCTATTACGGAAAGTTACCTTGCCTTGTCGCGTCGTTTGGAGAAGCTTTATGTTTATGCTTCAATGAAAAACGAC
CAAGATACAACAGTAGCCAAATACCAAGAATACCAAGCTAAAGCAACAGCAATCTATGCCAAATTTAGTGAAATTTTTGC
TTTTTACGAACCTGAATTGATGCAATTGTCTAAAGAAGCTTTTGAGGATTTCGTGGCAGAAACACCAGCTTTATCTGCTT
ATGCACATTTCTTTGAGCAACTTTTCAAACGTCAACCGCATGTTTTGTCACAGGCTGAGGAAGAATTATTAGCAGGTGCG
CAAGAAATTTTTGGAGCTGCAGGAGAAACATTTGAGCTTTTGGATAATGCTGACATCATTTTTCCAATCGTTCTAGATGA
TAAGGGCAAAGAAATTCAGCTAACGCATGGTAATTTCATTACCTTGTTAGAATCAAAAAATCGTGATGTCCGCAAAGAAG
CTTACCAAGCTTTGTATGCAACTTATGAACAATTCCAACACACTTATGCGAAAACCTTGCAAACCAATGTCAAAGTGCAT
AACTATGAAGCTCGTGTTCATCATTTTAAATCAGCACGTGAGGCAGCACTTTCGGCTAATTTTATTCCAGAATCTGTTTA
TGATACCCTGATTGAAACGGTCAATGCTAACCTGCCTTTGCTTCATCGTTATGTGGAACTTCGCAAGAAAATCCTTAAAC
TGGATGATTTGAAAATGTACGATATTCATACGCCACTTTCTGAAATGGATATGAGTTTTACCTATGAAGAAGCTTTGGCA
AAAGCTGAAGATGTCTTAGCTGTTTTTGGCAAAGAATATTCTGAGCGTGTTCATCGTGCTTTTACAGAACGCTGGATTGA
CGTCCATGTCAATAAAGGCAAACGCTCTGGTGCCTACTCTGGTGGTTCGTATGATACCAATGCTTTCATACTGTTAAATT
GGCAAGATACCTTGGATAATTTGTTTACCTTAGTTCACGAAACGGGGCACAGCTTGCATTCGACATTTACACGTGAAAAT
CAACCCTATGTTTATGGAGATTATAGTATTTTCTTGGCAGAAATTGCTTCAACAACTAATGAAAATATTTTGACAGAAAC
ACTTTTGAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCATTATCTTGATGGTTTCAAGAGTACCATTT
TCCGTCAAGCACAATTTGCGGAATTTGAAGATATTATCCATAAGGCAGACCAAGCTGGAGAAGTGTTGACGAGTGATTAT
CTCAACCAACTTTATGCCGACTTAAATGAGAAATATTATGGACTCAGCAAAGCAGACAACCCAGAAATCCAATACGAATG
GGCACGCATTCCGCATTTCTACTACAATTACTATGTTTACCAATACGCCACAGGATTTGCGGCAGCTAGTTATTTAGCTG
ATAAGATTGTTCACGGTACAAAAGCTGATATTGACCGCTACCTTGATTATTTGAAAGCAGGTAATTCTGATTATCCGCTT
AATGTGATTAAAAAAGCTGGTGTGGATATGACAACAAGTGCTTATCTAGACGCTGCTTTCCGAATTTTCGAGGAACGCTT
GGATGAGTTGGAAGCTTTAATTGAAAAAGGGGCACAACTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.333

100

0.703