Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   OQG81_RS03375 Genome accession   NZ_CP113440
Coordinates   605728..608013 (-) Length   761 a.a.
NCBI ID   WP_265643818.1    Uniprot ID   A0AA47FF26
Organism   Streptococcus macedonicus strain E37     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 600728..613013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQG81_RS03360 (OQG81_03360) ileS 601729..604527 (+) 2799 WP_039670559.1 isoleucine--tRNA ligase -
  OQG81_RS03365 (OQG81_03365) - 604627..604929 (-) 303 WP_014294163.1 DUF1827 family protein -
  OQG81_RS03370 (OQG81_03370) - 605000..605446 (-) 447 WP_099412195.1 NUDIX hydrolase -
  OQG81_RS03375 (OQG81_03375) clpE 605728..608013 (-) 2286 WP_265643818.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  OQG81_RS03380 (OQG81_03380) - 608155..608706 (-) 552 WP_265643819.1 DUF3278 domain-containing protein -
  OQG81_RS03385 (OQG81_03385) - 608709..608915 (-) 207 WP_265643820.1 helix-turn-helix transcriptional regulator -
  OQG81_RS03390 (OQG81_03390) argF 609245..610225 (+) 981 WP_265643821.1 ornithine carbamoyltransferase -
  OQG81_RS03395 (OQG81_03395) - 610393..610554 (+) 162 WP_006531779.1 hypothetical protein -
  OQG81_RS03400 (OQG81_03400) - 611875..612165 (+) 291 WP_269441547.1 hypothetical protein -
  OQG81_RS12160 (OQG81_03405) - 612578..612793 (+) 216 WP_269441548.1 hypothetical protein -

Sequence


Protein


Download         Length: 761 a.a.        Molecular weight: 84967.80 Da        Isoelectric Point: 4.7429

>NTDB_id=762288 OQG81_RS03375 WP_265643818.1 605728..608013(-) (clpE) [Streptococcus macedonicus strain E37]
MLCQNCHLNESTIHLYTNVNGQQKQIDLCQNCYQIMKTDPNNTILSGLRDATASFTQNQSTGMNPFDDFFSNLNNFHAFG
GQDFQNTPPTQSGGGNNGGNNNNYRPNGAASQQQQKGLLEEFGINVTDIARRGDIDPVIGRDAEIIRVIEILNRRTKNNP
VLIGEPGVGKTAVVEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRERKDVILFIDEIHEI
VGAGSAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDPALERRMQPVKVNEPSVEETITILRGIQKKYEDYHHV
KYSDDAIEAAANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPQEIDKRLAEAENLKTQATREEDYERAAYFRDQI
AKYKEMQQQTINEDDIPVITEKTIEAIVEEKTNIPVGDLKEKEQSQLINLADDLKTHVIGQDDAVDKIAKAIRRNRVGLG
TPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYS
LILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKTEASVGFGAAREGRTNSVLGELSNYFSP
EFMNRFDGIIEFKALSKDNLFQIVNLMLDDVNKRLATNDIHLEVTDKVKEKLVELGYDPKMGARPLRRTIQDHIEDAITD
FYLENPSEKDLKAAMTSNDKIIIKSDKKVEKEETTVSAESE

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=762288 OQG81_RS03375 WP_265643818.1 605728..608013(-) (clpE) [Streptococcus macedonicus strain E37]
ATGCTCTGTCAAAATTGTCATTTAAACGAATCAACAATTCATCTTTATACAAATGTCAATGGTCAGCAAAAGCAAATTGA
TTTGTGCCAAAACTGCTATCAAATCATGAAAACTGACCCTAACAATACTATTTTAAGTGGTTTAAGAGATGCAACAGCTT
CTTTCACACAAAATCAATCTACTGGTATGAATCCTTTTGATGATTTCTTCAGTAATTTGAATAATTTCCACGCATTCGGT
GGACAAGATTTCCAAAATACGCCTCCAACACAATCAGGTGGTGGAAATAACGGCGGCAATAATAACAATTATCGTCCAAA
CGGCGCAGCTAGCCAACAACAACAAAAAGGTTTGCTAGAAGAATTTGGTATCAACGTTACTGATATTGCTCGTCGCGGTG
ACATCGACCCTGTCATTGGGCGTGATGCCGAAATCATTCGTGTGATTGAAATTCTTAACCGTCGTACAAAAAATAATCCT
GTTCTTATTGGTGAACCTGGGGTTGGTAAAACAGCCGTTGTTGAAGGATTAGCTCAAAAAATCGTAGATGGTGACGTTCC
ACAAAAACTTCAAAATAAAGAAGTTATTCGTCTTGATGTCGTTAGCCTTGTACAAGGAACAGGTATTCGTGGTCAATTTG
AAGAACGTATGCAAAAACTCATGGAAGAAATCCGTGAACGTAAGGACGTTATTCTCTTCATTGACGAAATTCACGAAATT
GTCGGTGCTGGTTCTGCAGGCGACGGTAACATGGACGCTGGTAATATTTTAAAACCAGCACTTGCTCGTGGTGAACTTCA
ATTAGTTGGTGCTACGACACTCAATGAATACCGCATTATTGAAAAAGATCCAGCACTTGAACGCCGTATGCAACCTGTCA
AAGTTAATGAACCAAGCGTGGAAGAAACGATTACGATTCTTCGTGGTATTCAAAAGAAATACGAAGATTATCATCATGTC
AAATACAGCGATGATGCAATTGAGGCTGCCGCAAATCTTTCTAACCGTTACATTCAAGACCGCTTCCTCCCAGATAAAGC
CATTGATTTGCTAGACGAAGCTGGTTCTAAGATGAATTTAACCCTTAACTTTGTTGACCCACAAGAAATCGACAAGCGTT
TAGCGGAAGCTGAAAACCTAAAAACACAAGCTACTCGCGAGGAAGATTATGAACGCGCAGCTTATTTCCGTGACCAAATC
GCTAAATACAAGGAAATGCAACAACAAACAATCAACGAAGACGATATTCCAGTTATTACTGAAAAGACTATCGAAGCTAT
CGTTGAAGAAAAAACTAACATTCCTGTTGGTGATTTGAAAGAAAAGGAACAATCACAATTAATCAATCTCGCTGATGATT
TGAAAACACACGTCATTGGTCAAGATGATGCCGTTGACAAAATTGCCAAAGCCATTCGTCGTAACCGTGTCGGTCTCGGT
ACACCAAATCGTCCAATCGGTTCATTCCTCTTTGTTGGACCAACTGGTGTTGGTAAAACAGAACTTTCTAAACAATTAGC
GATTGAACTTTTCGGCTCAGCTGACAGCATGATTCGTTTCGATATGTCTGAATACATGGAAAAACATGCAGTCGCTAAAC
TTGTTGGAGCACCTCCAGGATACGTTGGTTACGAAGAAGCTGGTCAATTGACAGAAAAAGTTCGCCGTAATCCATACTCA
CTCATCCTTCTTGACGAAGTTGAAAAAGCGCATCCTGATGTTATGCATATGTTCTTGCAAGTTCTTGATGACGGTCGTTT
GACTGACGGTCAAGGTCGTACAGTAAGCTTCAAAGATACTATTATTATCATGACTTCTAATGCTGGTACTGGTAAAACAG
AAGCTTCAGTTGGTTTCGGTGCTGCTCGTGAAGGACGTACAAATTCTGTCCTTGGTGAACTTAGCAACTACTTCAGCCCT
GAATTCATGAACCGTTTCGACGGTATTATCGAATTTAAGGCTCTTAGCAAGGACAATCTTTTCCAAATTGTTAACCTTAT
GCTTGACGATGTCAATAAACGTCTAGCAACTAACGATATTCACCTCGAAGTCACTGATAAGGTAAAAGAAAAATTAGTTG
AACTTGGCTACGATCCTAAAATGGGAGCTCGTCCATTACGTCGTACTATCCAAGACCACATTGAAGATGCCATTACAGAC
TTCTATCTTGAAAATCCAAGCGAAAAAGATTTGAAAGCTGCTATGACAAGCAATGATAAAATTATCATCAAATCTGATAA
AAAGGTTGAAAAAGAAGAAACAACCGTTTCAGCAGAATCAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

85.239

98.817

0.842

  clpE Streptococcus pneumoniae Rx1

83.4

98.949

0.825

  clpE Streptococcus pneumoniae D39

83.4

98.949

0.825

  clpE Streptococcus pneumoniae R6

83.4

98.949

0.825

  clpE Streptococcus pneumoniae TIGR4

83.4

98.949

0.825

  clpC Lactococcus lactis subsp. cremoris KW2

76.291

99.212

0.757

  clpC Bacillus subtilis subsp. subtilis str. 168

51.657

87.254

0.451

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.48

82.129

0.398

  clpC Streptococcus pneumoniae Rx1

46.552

83.837

0.39

  clpC Streptococcus pneumoniae D39

46.552

83.837

0.39

  clpC Streptococcus pneumoniae TIGR4

46.395

83.837

0.389

  clpC Streptococcus mutans UA159

47.819

81.34

0.389

  clpC Streptococcus thermophilus LMD-9

46.527

81.34

0.378

  clpC Streptococcus thermophilus LMG 18311

46.067

81.866

0.377