Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OXA86_RS13630 Genome accession   NZ_CP113439
Coordinates   3042241..3042900 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC002     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3037241..3047900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS13615 (OXA86_13615) - 3037960..3038619 (+) 660 WP_044497520.1 hypothetical protein -
  OXA86_RS13620 (OXA86_13620) lcl 3038787..3040349 (+) 1563 WP_268188108.1 collagen-like adhesin Lcl -
  OXA86_RS13625 (OXA86_13625) uvrC 3040373..3042229 (-) 1857 WP_044497797.1 excinuclease ABC subunit UvrC -
  OXA86_RS13630 (OXA86_13630) letA 3042241..3042900 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  OXA86_RS13635 (OXA86_13635) phhA 3043025..3043843 (-) 819 WP_044497800.1 phenylalanine 4-monooxygenase -
  OXA86_RS13640 (OXA86_13640) - 3044283..3045380 (+) 1098 WP_014842695.1 competence/damage-inducible protein A -
  OXA86_RS13645 (OXA86_13645) cgtA 3045339..3046364 (-) 1026 WP_014842696.1 Obg family GTPase CgtA -
  OXA86_RS13650 (OXA86_13650) rpmA 3046579..3046857 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  OXA86_RS13655 (OXA86_13655) rplU 3046870..3047181 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=762256 OXA86_RS13630 WP_011216518.1 3042241..3042900(-) (letA) [Legionella pneumophila strain PATHC002]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=762256 OXA86_RS13630 WP_011216518.1 3042241..3042900(-) (letA) [Legionella pneumophila strain PATHC002]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGCGCTATGGGATACCTTACTAAAGAGTCCGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCCAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCGGATAGATTATTTTTAAGTAGTAAAACTATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995