Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   OXA86_RS10075 Genome accession   NZ_CP113439
Coordinates   2229368..2229682 (-) Length   104 a.a.
NCBI ID   WP_014842047.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2224368..2234682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS10050 (OXA86_10050) - 2224793..2225293 (-) 501 WP_014842042.1 hypothetical protein -
  OXA86_RS10055 (OXA86_10055) - 2225785..2226645 (+) 861 WP_014842043.1 polysaccharide deacetylase family protein -
  OXA86_RS10060 (OXA86_10060) - 2226763..2227959 (-) 1197 WP_014842044.1 murein transglycosylase A -
  OXA86_RS10065 (OXA86_10065) lpp1976 2228069..2228626 (-) 558 WP_014842045.1 hypothetical protein Machinery gene
  OXA86_RS10070 (OXA86_10070) lpp1977 2228623..2229429 (-) 807 WP_051009151.1 PilW family protein Machinery gene
  OXA86_RS10075 (OXA86_10075) lpp1978 2229368..2229682 (-) 315 WP_014842047.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OXA86_RS10080 (OXA86_10080) hisC 2229842..2230951 (+) 1110 WP_014842048.1 histidinol-phosphate transaminase -
  OXA86_RS10085 (OXA86_10085) - 2230988..2231329 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  OXA86_RS10090 (OXA86_10090) secF 2231521..2232438 (-) 918 WP_014842049.1 protein translocase subunit SecF -
  OXA86_RS10095 (OXA86_10095) secD 2232451..2234307 (-) 1857 WP_010947717.1 protein translocase subunit SecD -
  OXA86_RS10100 (OXA86_10100) yajC 2234329..2234664 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12293.40 Da        Isoelectric Point: 9.8344

>NTDB_id=762249 OXA86_RS10075 WP_014842047.1 2229368..2229682(-) (lpp1978) [Legionella pneumophila strain PATHC002]
MSKHQGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYTLDAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=762249 OXA86_RS10075 WP_014842047.1 2229368..2229682(-) (lpp1978) [Legionella pneumophila strain PATHC002]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGCTCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGTTCCTATACTCTGGATGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

97.115

100

0.971
  lpp1978 Legionella pneumophila str. Paris

95.192

100

0.952