Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   LDM87_RS04765 Genome accession   NZ_AP024964
Coordinates   1008552..1009787 (-) Length   411 a.a.
NCBI ID   WP_223892619.1    Uniprot ID   -
Organism   Helicobacter pylori strain #6     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1003552..1014787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS04725 (OHP006_09440) - 1003672..1005399 (-) 1728 WP_223892616.1 type IV secretory system conjugative DNA transfer family protein -
  LDM87_RS04730 (OHP006_09450) - 1005400..1005957 (-) 558 WP_223892617.1 hypothetical protein -
  LDM87_RS04735 (OHP006_09460) - 1005958..1006248 (-) 291 WP_000159826.1 hypothetical protein -
  LDM87_RS04740 (OHP006_09470) - 1006245..1006700 (-) 456 WP_223892618.1 mobilization protein -
  LDM87_RS04745 - 1006697..1007637 (-) 941 Protein_933 CpaF/VirB11 family protein -
  LDM87_RS04750 (OHP006_09500) - 1007637..1007936 (-) 300 WP_000660136.1 hypothetical protein -
  LDM87_RS04755 (OHP006_09510) - 1007933..1008196 (-) 264 WP_000564645.1 hypothetical protein -
  LDM87_RS04760 (OHP006_09520) - 1008189..1008482 (-) 294 WP_000671329.1 hypothetical protein -
  LDM87_RS04765 (OHP006_09530) comB10 1008552..1009787 (-) 1236 WP_223892619.1 DNA type IV secretion system protein ComB10 Machinery gene
  LDM87_RS04770 (OHP006_09550) - 1009784..1011321 (-) 1538 Protein_938 TrbG/VirB9 family P-type conjugative transfer protein -
  LDM87_RS04775 (OHP006_09560) - 1011321..1012307 (-) 987 WP_180505273.1 VirB8/TrbF family protein -
  LDM87_RS07840 (OHP006_09570) - 1012309..1012437 (-) 129 WP_001185489.1 hypothetical protein -
  LDM87_RS04780 - 1012437..1014371 (-) 1935 Protein_941 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46441.57 Da        Isoelectric Point: 10.0905

>NTDB_id=76224 LDM87_RS04765 WP_223892619.1 1008552..1009787(-) (comB10) [Helicobacter pylori strain #6]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIKKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=76224 LDM87_RS04765 WP_223892619.1 1008552..1009787(-) (comB10) [Helicobacter pylori strain #6]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAAAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACACTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

45.592

96.594

0.44

Multiple sequence alignment