Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OXA86_RS04255 Genome accession   NZ_CP113439
Coordinates   946422..946739 (+) Length   105 a.a.
NCBI ID   WP_027220896.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC002     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 941422..951739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS04235 (OXA86_04235) - 941574..943013 (+) 1440 WP_044497233.1 cation:proton antiporter -
  OXA86_RS04240 (OXA86_04240) nadC 943010..943852 (+) 843 WP_013101201.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OXA86_RS04245 (OXA86_04245) - 943849..944940 (+) 1092 WP_010946544.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  OXA86_RS04250 (OXA86_04250) - 944915..946330 (+) 1416 WP_044497231.1 M20 family metallopeptidase -
  OXA86_RS04255 (OXA86_04255) comEA 946422..946739 (+) 318 WP_027220896.1 ComEA family DNA-binding protein Machinery gene
  OXA86_RS04260 (OXA86_04260) - 946935..947972 (+) 1038 WP_011213320.1 rod shape-determining protein -
  OXA86_RS04265 (OXA86_04265) mreC 947950..948858 (+) 909 WP_010946548.1 rod shape-determining protein MreC -
  OXA86_RS04270 (OXA86_04270) mreD 948855..949334 (+) 480 WP_027220897.1 rod shape-determining protein MreD -
  OXA86_RS04275 (OXA86_04275) - 949270..949872 (-) 603 WP_027220898.1 pseudouridine synthase -
  OXA86_RS04280 (OXA86_04280) - 950133..950831 (+) 699 WP_027220899.1 hypothetical protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11739.76 Da        Isoelectric Point: 10.5233

>NTDB_id=762226 OXA86_RS04255 WP_027220896.1 946422..946739(+) (comEA) [Legionella pneumophila strain PATHC002]
MKARLIAILLSIIVIPFSSQAENEPQKTPAKQVLVKGKINLNTADVYSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEEL
AEVKGIGQRFVDKNREKLKEIFVIN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=762226 OXA86_RS04255 WP_027220896.1 946422..946739(+) (comEA) [Legionella pneumophila strain PATHC002]
ATGAAAGCAAGACTCATTGCTATTTTGTTGTCAATTATTGTTATCCCTTTCTCTTCTCAAGCTGAGAACGAGCCTCAAAA
AACTCCAGCTAAACAAGTCCTTGTTAAGGGCAAGATTAATCTTAATACAGCGGATGTGTATTCTTTAACAGGCTCTTTTA
AAGGGATAGGAAAAAAACGGGCTGAAGCTATTATTGCTTATAGAGAGAATCATCAAGGGTTTAAATCTCTGGAAGAGCTT
GCGGAAGTCAAGGGTATAGGGCAGCGTTTTGTAGATAAAAATAGAGAAAAACTGAAAGAAATTTTCGTTATTAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

99.048

100

0.99
  comEA Legionella pneumophila strain ERS1305867

99.048

100

0.99
  comEA Staphylococcus aureus N315

38.384

94.286

0.362
  comEA Staphylococcus aureus MW2

38.384

94.286

0.362