Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   OXA86_RS03365 Genome accession   NZ_CP113439
Coordinates   706575..707282 (-) Length   235 a.a.
NCBI ID   WP_044497007.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 701575..712282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS03350 (OXA86_03350) - 704450..704962 (-) 513 WP_027220490.1 pilus assembly protein -
  OXA86_RS03355 (OXA86_03355) - 704959..706026 (-) 1068 WP_044497006.1 PilW family protein -
  OXA86_RS03360 (OXA86_03360) pilV 706023..706562 (-) 540 WP_011945793.1 type IV pilus modification protein PilV -
  OXA86_RS03365 (OXA86_03365) fimT 706575..707282 (-) 708 WP_044497007.1 GspH/FimT family pseudopilin Machinery gene
  OXA86_RS03370 (OXA86_03370) - 707503..708363 (-) 861 WP_027220493.1 polysaccharide deacetylase family protein -
  OXA86_RS03375 (OXA86_03375) - 708540..709889 (-) 1350 WP_080275573.1 lpg0634 family Dot/Icm T4SS effector -
  OXA86_RS03380 (OXA86_03380) - 710179..711660 (+) 1482 WP_044497008.1 ArnT family glycosyltransferase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24882.54 Da        Isoelectric Point: 7.5608

>NTDB_id=762225 OXA86_RS03365 WP_044497007.1 706575..707282(-) (fimT) [Legionella pneumophila strain PATHC002]
MNKVITESQKFTLRNVANMLFCVESSVLPAQSNIAQKIQTKGIMYNDLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=762225 OXA86_RS03365 WP_044497007.1 706575..707282(-) (fimT) [Legionella pneumophila strain PATHC002]
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCGCAACGTAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAAATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTCTCTGTT
TTTGCCATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAGCCGTTTGACTTCAAACATTGACTC
ACTGGTAAGTTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CTGGTTCAACAGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAGCCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCCCGTTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCCGGAACAACACCCGGCCAGGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)

Type II transport protein GspH (GspH)

(106-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

98.723

100

0.987