Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   OXA86_RS00750 Genome accession   NZ_CP113439
Coordinates   165036..165728 (+) Length   230 a.a.
NCBI ID   WP_044497373.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC002     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 163978..164437 165036..165728 flank 599


Gene organization within MGE regions


Location: 163978..165728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS00740 (OXA86_00740) - 163978..164437 (+) 460 Protein_145 hypothetical protein -
  OXA86_RS00745 (OXA86_00745) - 164463..164755 (+) 293 Protein_146 GIY-YIG nuclease family protein -
  OXA86_RS00750 (OXA86_00750) rocC 165036..165728 (+) 693 WP_044497373.1 ProQ/FinO family protein Regulator

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25880.81 Da        Isoelectric Point: 10.7396

>NTDB_id=762220 OXA86_RS00750 WP_044497373.1 165036..165728(+) (rocC) [Legionella pneumophila strain PATHC002]
MRKQALHPRTAVINKAQKNQSRRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAERVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSYVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=762220 OXA86_RS00750 WP_044497373.1 165036..165728(+) (rocC) [Legionella pneumophila strain PATHC002]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAGGCGTGCGCGATCTGA
CGCATTATTATGGCTTGCAGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCGAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCACGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCACGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCATATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCGGAAGAGAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

97.826

100

0.978