Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   OXA88_RS09395 Genome accession   NZ_CP113436
Coordinates   2126358..2126672 (-) Length   104 a.a.
NCBI ID   WP_010947713.1    Uniprot ID   Q5ZU11
Organism   Legionella pneumophila strain PATHC021     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2121358..2131672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA88_RS09370 (OXA88_09370) - 2121787..2122287 (-) 501 WP_015444348.1 hypothetical protein -
  OXA88_RS09375 (OXA88_09375) - 2122779..2123639 (+) 861 WP_015444347.1 polysaccharide deacetylase family protein -
  OXA88_RS09380 (OXA88_09380) - 2123756..2124949 (-) 1194 WP_010947710.1 murein transglycosylase A -
  OXA88_RS09385 (OXA88_09385) lpp1976 2125059..2125616 (-) 558 WP_010947711.1 hypothetical protein Machinery gene
  OXA88_RS09390 (OXA88_09390) lpp1977 2125613..2126419 (-) 807 WP_010947712.1 PilW family protein Machinery gene
  OXA88_RS09395 (OXA88_09395) lpp1978 2126358..2126672 (-) 315 WP_010947713.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OXA88_RS09400 (OXA88_09400) hisC 2126832..2127941 (+) 1110 WP_015444344.1 histidinol-phosphate transaminase -
  OXA88_RS09405 (OXA88_09405) - 2127978..2128319 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  OXA88_RS09410 (OXA88_09410) secF 2128492..2129409 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  OXA88_RS09415 (OXA88_09415) secD 2129422..2131278 (-) 1857 WP_010947717.1 protein translocase subunit SecD -
  OXA88_RS09420 (OXA88_09420) yajC 2131300..2131635 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12330.42 Da        Isoelectric Point: 9.4609

>NTDB_id=762123 OXA88_RS09395 WP_010947713.1 2126358..2126672(-) (lpp1978) [Legionella pneumophila strain PATHC021]
MSKHQGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDIINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLDAH

Nucleotide


Download         Length: 315 bp        

>NTDB_id=762123 OXA88_RS09395 WP_010947713.1 2126358..2126672(-) (lpp1978) [Legionella pneumophila strain PATHC021]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATATAATCAATCATCTTATTTGGCGAATTCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGAGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGATGCTCATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZU11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

96.154

100

0.962
  lpp1978 Legionella pneumophila str. Paris

94.231

100

0.942